View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_38 (Length: 394)
Name: NF11385A_low_38
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_38 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 40288621 - 40288861
Alignment:
| Q |
154 |
aaacatacatacaaaaataatgtgagttgttattttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagg |
253 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40288621 |
aaacatgcatacaaaaataatgtgagttgttattttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagg |
40288720 |
T |
|
| Q |
254 |
gtgttagaggtttcttcaaaggctgggtgccaactttgcttggttacagtgctcaaggagcatgcaagtttggattttatgagttcttcaaaaagtatta |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40288721 |
gtgttagaggtttcttcaaaggctgggtgccaactttgcttggttacagtgctcaaggagcatgcaagtttggattttacgagttcttcaaaaagtatta |
40288820 |
T |
|
| Q |
354 |
ctcagatcttgctggaccagagaatgcagtcaagtacaaaa |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40288821 |
ctcagatcttgctggaccagagaatgcagtcaagtacaaaa |
40288861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 40285949 - 40285801
Alignment:
| Q |
14 |
tggacatcatattagataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggttttaatacnnnnnnna |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40285949 |
tggacatcatat-agataaaacatgggttatataacgactttgaaactcttgatttgtcagcttgttctaggtaacacagtggttttaatacttttttta |
40285851 |
T |
|
| Q |
114 |
tgaggtgaggaagaagtgaaaattttaatttgagtggttaaaacatacat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40285850 |
tgaggtgaggaagaagtgaaaattttaatttgagtggttaaaacatacat |
40285801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 187 - 392
Target Start/End: Complemental strand, 32261200 - 32260995
Alignment:
| Q |
187 |
tttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaa |
286 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| ||||| ||||||||||| | ||||||||||| |||| || || ||| || |||||||||| |
|
|
| T |
32261200 |
tttcagattgaccctgccaagtacaagagcatctcatcagggtttggagttttgttcaaggagcagggagttaagggatttttccgcggatgggtgccaa |
32261101 |
T |
|
| Q |
287 |
ctttgcttggttacagtgctcaaggagcatgcaagtttggattttatgagttcttcaaaaagtattactcagatcttgctggaccagagaatgcagtcaa |
386 |
Q |
| |
|
| || |||||||||||||| || || || ||||| ||||| || ||||||||||| || ||||| || || ||| ||||||| || ||| |||||| ||| |
|
|
| T |
32261100 |
cattacttggttacagtgcccagggtgcttgcaaatttgggttctatgagttctttaagaagtactattctgatattgctggccccgagtatgcagccaa |
32261001 |
T |
|
| Q |
387 |
gtacaa |
392 |
Q |
| |
|
|||||| |
|
|
| T |
32261000 |
gtacaa |
32260995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 380
Target Start/End: Original strand, 10599829 - 10600022
Alignment:
| Q |
187 |
tttcagattgaccctgcaaagtataagagcatcagttcaggatttggagttttacttaaggagcagggtgttagaggtttcttcaaaggctgggtgccaa |
286 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||||||| | || ||||| || || ||| ||| || |||| ||| |||| |||| |
|
|
| T |
10599829 |
tttcagattgaccctgctaagtacaagagcatttcctcaggatttggagtgatgctcaaggaacaaggatttaaaggatttttcagaggatgggcaccaa |
10599928 |
T |
|
| Q |
287 |
ctttgcttggttacagtgctcaaggagcatgcaagtttggattttatgagttcttcaaaaagtattactcagatcttgctggaccagagaatgc |
380 |
Q |
| |
|
| || |||||||||||||| ||||| || | ||| | ||| ||||||||| ||||| |||| || |||||| ||| ||| ||||| ||||| |
|
|
| T |
10599929 |
catttcttggttacagtgcacaaggtgctttcaaatatgggctttatgagtatttcaagaagtcctattcagatgttgttggtccagaaaatgc |
10600022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University