View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_39 (Length: 389)
Name: NF11385A_low_39
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 4 - 384
Target Start/End: Original strand, 38935997 - 38936377
Alignment:
| Q |
4 |
actttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaatcgcgtca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38935997 |
actttcgtgtttggtagcaatctcaacgccgaaacggaacaaggcgaaactggttcatctcggagcagtgaaggtcttctcgaaccttctaaccgcgtca |
38936096 |
T |
|
| Q |
104 |
catagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaactgtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgt |
203 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936097 |
cctagtttgtgtgtttctgtgacggagaaggtgttgaaacttctagaaacggtgtcgtcgacgaaggaggggaggtcggagatatgtgaagcgccgtcgt |
38936196 |
T |
|
| Q |
204 |
gtgtggcggcgatagtgaacaaagtattgaaagtatccaccggagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatca |
303 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936197 |
gtgtggtggcgatagtgaacaaagtattgaaagtatccaccgtagcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatca |
38936296 |
T |
|
| Q |
304 |
aaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936297 |
aaaggcgcaagaagctgttacgaaagcgaatggattaacgaagattttgcttctgatgcaaagtaattgttcgccacaagt |
38936377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 384
Target Start/End: Original strand, 43741730 - 43741866
Alignment:
| Q |
248 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
347 |
Q |
| |
|
|||||||||||||| || || | || |||||||| |||||| | ||||| |||||||| || |||||||| ||||||| || |||||||||||||||| |
|
|
| T |
43741730 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
43741829 |
T |
|
| Q |
348 |
ttttgcttctgatgcaaagtaattgttcgccacaagt |
384 |
Q |
| |
|
| ||| | || || || ||||||||||| |||||||| |
|
|
| T |
43741830 |
tattgttgctaatacagagtaattgttctccacaagt |
43741866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University