View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_4 (Length: 547)
Name: NF11385A_low_4
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_4 |
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| [»] scaffold0543 (2 HSPs) |
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| [»] scaffold0492 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 19369899 - 19369363
Alignment:
| Q |
1 |
caaatacaaaactccaaacgaacaaggaattatctctctgccaaaggaattctaccacatgtcagcttttatttatttgaatgataatggatagagtgtg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
19369899 |
caaatacaaaactccaaacgatcaaggaattatctctctgccaaaggaattccaccgcatgtcaacttttatttatttgaatgataatggatagagcgtg |
19369800 |
T |
|
| Q |
101 |
caatagcagcagccttatgcttgtcacaaaaattataataactccaataagtccgtgactctactttcttaattcattctcaatcttgagaa-tgtttgt |
199 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
19369799 |
caatagcagcagccttaagcttgtcacaacaattatcataactccaataagtccgagactctactttctgaattcattctcaatcttgagaaatgtttgt |
19369700 |
T |
|
| Q |
200 |
gtgtgtacaataacctatcctttgctttttatgatatatgctttagaaacattgatctttctttgaattatacatcttgaactatacctttgtctttatg |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
19369699 |
ttgtgtacaataacctatcctttgatttttatgatatatgctttagaaacattgatctttctttgaattctacatcttgaactatagttttgtctttatg |
19369600 |
T |
|
| Q |
300 |
gagtcttttagtgatatatgcttgtcacaaacattaataactcctgttatacgcaatagtttagttctgctatgcattctcctggcta----tataattt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19369599 |
gagtcttttagtgatatatgcttgtcacaaacattaataactcctgttatacgcaatagtttagttctgctatgcattctcctggctatatatataattt |
19369500 |
T |
|
| Q |
396 |
tcccagctcattattggtgttccttgaatttgttgtattttagcaaaatcattgtactgatggtaattttaggtagaaactttgttgtctttatctctcg |
495 |
Q |
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| T |
19369499 |
tcccagctca--attggtgttccttgaatttgttgtattttagcaaaatcattgtactgatggtaattttaggtagaaactttgttgtctttatctctcg |
19369402 |
T |
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| Q |
496 |
attgtatctgagttgaacaagcttagaaccacaacctct |
534 |
Q |
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| T |
19369401 |
attgtatctgagttgaacaagcttagaaccacaacctct |
19369363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 161 - 310
Target Start/End: Complemental strand, 49856405 - 49856258
Alignment:
| Q |
161 |
ctactttcttaattcattctcaatcttgagaatgtttgtgtgtgtacaataacctatcctttgctttttatgatatatgctttagaaacattgatctttc |
260 |
Q |
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||||||| | |||||||||| |||||||||| ||||||| |||||||||||| |||||||| |||| ||||||||||||||||||| |||| | || |
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| T |
49856405 |
ctactttataaattcattctgaatcttgagactgtttgtttgtgtacaataatttatcctttaattttgatgatatatgctttagaaatgttga--tgtc |
49856308 |
T |
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| Q |
261 |
tttgaattatacatcttgaactatacctttgtctttatggagtcttttag |
310 |
Q |
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||| ||| || |||| ||||| ||||||||||||||||| ||||||||| |
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| T |
49856307 |
tttcgattctatatctggaactgtacctttgtctttatggggtcttttag |
49856258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 49973014 - 49972939
Alignment:
| Q |
5 |
tacaaaactccaaacgaacaaggaattatctctctgccaaaggaattctaccacatgtcagcttttatttatttga |
80 |
Q |
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|||||| ||||||| ||| |||||||||||| | |||| || |||||| ||||||||| | ||||||||||||||| |
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| T |
49973014 |
tacaaagctccaaatgaaaaaggaattatctttgtgcctaaagaattcaaccacatgtaaacttttatttatttga |
49972939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 49867976 - 49867879
Alignment:
| Q |
1 |
caaatacaaaactccaaacgaacaaggaattatctctctgccaaaggaattctaccacatgtcagctttt--atttatttgaatgataatggatagag |
96 |
Q |
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| T |
49867976 |
caaatataaagctccaaatgttcatggaattatctgtatgcccaaggaattcagccacatgtaaacttttctatttatttgaatgataatggatagag |
49867879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 49856517 - 49856468
Alignment:
| Q |
47 |
gaattctaccacatgtcagcttttatttatttgaatgataatggatagag |
96 |
Q |
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| T |
49856517 |
gaattcaaccacatgtccacttctatttatttgaatgataatgtatagag |
49856468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2080 - 1988
Alignment:
| Q |
1 |
caaatacaaaactccaaacgaacaaggaattatctctctgccaaaggaattctaccacatgtcagcttttatttatttgaatgataatggata |
93 |
Q |
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| T |
2080 |
caaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaatgataatggata |
1988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 1912 - 1855
Alignment:
| Q |
236 |
tatgctttagaaacattgatctttctttgaattatacatcttgaactatacctttgtc |
293 |
Q |
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| T |
1912 |
tatgctttaaaaacattgatctttctttaaattatatatctggaactatacatttgtc |
1855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3626 - 3534
Alignment:
| Q |
1 |
caaatacaaaactccaaacgaacaaggaattatctctctgccaaaggaattctaccacatgtcagcttttatttatttgaatgataatggata |
93 |
Q |
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| T |
3626 |
caaatacaaagctccaaatgttcatggaattatatttgtgcccaaggaattcaatcacatgtcaacttttatttatttgaatgataatggata |
3534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 3458 - 3401
Alignment:
| Q |
236 |
tatgctttagaaacattgatctttctttgaattatacatcttgaactatacctttgtc |
293 |
Q |
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||||||||| |||||||||||||||||| ||||||| |||| ||||||||| |||||| |
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| T |
3458 |
tatgctttaaaaacattgatctttctttaaattatatatctggaactatacatttgtc |
3401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 20130760 - 20130826
Alignment:
| Q |
244 |
agaaacattgatctttctttgaattatacatcttgaactatacctttgtctttatggagtcttttag |
310 |
Q |
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|||||||||||||| |||||||||| |||| |||||||||||||||||||| | |||||||||| |
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| T |
20130760 |
agaaacattgatctctctttgaattcattatctggaactatacctttgtctttaggaagtcttttag |
20130826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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