View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_41 (Length: 381)
Name: NF11385A_low_41
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 377
Target Start/End: Original strand, 45141604 - 45141971
Alignment:
| Q |
10 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141604 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtctagcagcatactagaatttgatctgaatgaatttgacaacaccat |
45141703 |
T |
|
| Q |
110 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141704 |
ggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgccagtgta |
45141803 |
T |
|
| Q |
210 |
gctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacg |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45141804 |
gctgcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacg |
45141903 |
T |
|
| Q |
310 |
gaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatg |
377 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141904 |
gaattagagtcaattcaatctcaccgtatggtgttgccacgcctcttgcatgtagagcactgaatatg |
45141971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 45152247 - 45152612
Alignment:
| Q |
10 |
aatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------tgtctagcagcatactagaatttgatctgaatgaatttgacaa |
103 |
Q |
| |
|
||||||||||| ||||||| ||||| ||||| |||||||||| ||||| || |||||| |||||||||| |||| | |||||||||||||| |
|
|
| T |
45152247 |
aatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgctatgtctatcagcatactaa----tgatgtaaatgaatttgacaa |
45152342 |
T |
|
| Q |
104 |
caccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtggagagaaaaatccgtggatccataatttgtactgcc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||| ||| | |||||||| |||||||| ||||||||||||||||| || || |
|
|
| T |
45152343 |
caccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatccataatttgcacggct |
45152442 |
T |
|
| Q |
204 |
agtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggag |
303 |
Q |
| |
|
||||| |||| || ||||||||| | | || ||||||||| | |||||||||||||| |||| ||||| || ||||||||| |||||||||||| |
|
|
| T |
45152443 |
agtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacgtgcagtgagcttggag |
45152542 |
T |
|
| Q |
304 |
cttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaa |
373 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
45152543 |
cttatggaataagagttaattcaatttcaccttctggtgttgccacacctcttttatgtagagcactgaa |
45152612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 69 - 371
Target Start/End: Original strand, 38256127 - 38256429
Alignment:
| Q |
69 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
168 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
|
|
| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
|
| Q |
169 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctctt |
268 |
Q |
| |
|
| |||||||| || ||||| |||||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| | |
|
|
| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttat |
38256326 |
T |
|
| Q |
269 |
aggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctcttgcatgtagagca |
368 |
Q |
| |
|
||| ||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||| || |||||||||||||||||| |
|
|
| T |
38256327 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctcttgcatgtagagca |
38256426 |
T |
|
| Q |
369 |
ctg |
371 |
Q |
| |
|
||| |
|
|
| T |
38256427 |
ctg |
38256429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University