View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_43 (Length: 380)
Name: NF11385A_low_43
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 29056524 - 29056156
Alignment:
| Q |
7 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacatttttcaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
106 |
Q |
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| T |
29056524 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
29056425 |
T |
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| Q |
107 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
206 |
Q |
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| T |
29056424 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
29056325 |
T |
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| Q |
207 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaag |
306 |
Q |
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| T |
29056324 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaag |
29056225 |
T |
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| Q |
307 |
atccaaacgcctactgatgaagtggttgttccttatgacagtttggcaccaactcctgagggtaatctt |
375 |
Q |
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| T |
29056224 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
29056156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 364
Target Start/End: Original strand, 32848736 - 32848826
Alignment:
| Q |
274 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgttccttatgacagtttggcaccaactcctg |
364 |
Q |
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| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctg |
32848826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
42 |
catttgaaacatttttcaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
111 |
Q |
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| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
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