View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_46 (Length: 378)
Name: NF11385A_low_46
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 27 - 373
Target Start/End: Original strand, 34958927 - 34959277
Alignment:
| Q |
27 |
gtttggtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcagga |
126 |
Q |
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| T |
34958927 |
gtttcgtgttcgtgtatgagtttgtgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcagga |
34959025 |
T |
|
| Q |
127 |
ttgtata-aaaaagttcatgccatattaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctc |
221 |
Q |
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| T |
34959026 |
ttgtacacaaaaagtgcaggacatattaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctc |
34959125 |
T |
|
| Q |
222 |
atgtgcacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcata |
321 |
Q |
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| T |
34959126 |
atgtgcacattgaaactatattaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcata |
34959225 |
T |
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| Q |
322 |
tgatgcatgcattttattttaaagatatgattcatttgcatttcactcttgt |
373 |
Q |
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| T |
34959226 |
tgatgcatgcattttattttaaagatatgattcatttgcatttcactcttgt |
34959277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 27 - 373
Target Start/End: Complemental strand, 3921657 - 3921320
Alignment:
| Q |
27 |
gtttggtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcagga |
126 |
Q |
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| T |
3921657 |
gtttcgtgttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgagga |
3921558 |
T |
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| Q |
127 |
ttgtata-aaaaagttcatgccatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgt |
225 |
Q |
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| T |
3921557 |
ttgtacacaaaaagtgtaggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgt |
3921468 |
T |
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| Q |
226 |
gcacattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgat |
325 |
Q |
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| T |
3921467 |
gcacattgaacctatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgat |
3921368 |
T |
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| Q |
326 |
gcatgcattttattttaaagatatgattcatttgcatttcactcttgt |
373 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3921367 |
gcatgcattttattttaaagatatgattcatctgcatttcactcttgt |
3921320 |
T |
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