View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_51 (Length: 375)
Name: NF11385A_low_51
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 31784801 - 31784437
Alignment:
| Q |
5 |
gtttggtgttgtatgcgcctttttagccgtatctgcaagtaaatagggagcatgaagctcattgtcaccaatcaattttcgtttgtttatgaagtttaga |
104 |
Q |
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||||| ||||||||| ||| ||||||||| |||||| ||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31784801 |
gtttgatgttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
31784702 |
T |
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| Q |
105 |
ttaggaatgacatttattgaattgttagctacaccagtgcttttgtttctgatgtctctaaccatatgttcaacttttatcttgatacctccgcccctta |
204 |
Q |
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|||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
31784701 |
ttaggaatgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgta |
31784602 |
T |
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| Q |
205 |
cactcattattctttcctcataatagttggagggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttac |
304 |
Q |
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|||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
31784601 |
cactcagcattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgc |
31784502 |
T |
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| Q |
305 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
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| T |
31784501 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
31784437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 57 - 324
Target Start/End: Original strand, 19631624 - 19631893
Alignment:
| Q |
57 |
tgaagctcattgtcaccaatcaattttcgtttgtttatgaagtttagattaggaatgacatttattgaattgttagctacaccagtgcttttgtttctga |
156 |
Q |
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| T |
19631624 |
tgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggtttctga |
19631723 |
T |
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| Q |
157 |
tgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggagggttcccttgtttgcatc |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
19631724 |
tgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtttgcatc |
19631823 |
T |
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| Q |
255 |
aaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
324 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631824 |
aaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 19633725 - 19633774
Alignment:
| Q |
320 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
19633774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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