View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_56 (Length: 367)
Name: NF11385A_low_56
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 136 - 354
Target Start/End: Complemental strand, 31491053 - 31490834
Alignment:
| Q |
136 |
ttaggttgaaattagttgaacctaactagtcgaaccgaactttttgcgaaggaaaatgatatatatcgcaacgacagctaacaagcatttgca-taggtc |
234 |
Q |
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| T |
31491053 |
ttaggttgaaattaattgaacctaactagtcgaaccgaactttttgcgaaggaaaatgatatatatcgtgacgacacctaacaagcatttgcagtaggtc |
31490954 |
T |
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| Q |
235 |
ccttttacttccatcaagccatgcattcagtcaaacaaccaataaaccaatggttgtatttcatccgtggtctgtttgctatgtttttcttcgctatata |
334 |
Q |
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| T |
31490953 |
ccttttacttccatcaatccatgcattcagtcaaacaaccaataaaccaatggttgtatttcattcgtggtctgctcactatgtttttcttcgctatata |
31490854 |
T |
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| Q |
335 |
taacattggtcttttgtgaa |
354 |
Q |
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| T |
31490853 |
tagcattggtcttttgtgaa |
31490834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 31491212 - 31491082
Alignment:
| Q |
7 |
agtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgtttttaagtattgggccatagtgttgatcaaaatgttga |
106 |
Q |
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| T |
31491212 |
agtttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgtttttaagtattgggccatagtgttgatcaaaatgttga |
31491113 |
T |
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| Q |
107 |
tatgggcaattgtgtctctagtaaacttttt |
137 |
Q |
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| T |
31491112 |
tatgggcaattgagtctctagtaaacttttt |
31491082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 50445835 - 50445730
Alignment:
| Q |
9 |
tttcactacaatgaatttatgtgttgtccctctatcaacttatttgtttaaattgtttgttttt-------aagtattgggccatagtgttgatcaaaat |
101 |
Q |
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| T |
50445835 |
tttcactacagtgaattt-tgtgtt-tccctctatcaatttatttgtttaaattgtgtttttttatttttgaagtattgggccatattgttgctcaaaat |
50445738 |
T |
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| Q |
102 |
gttgatat |
109 |
Q |
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|||||||| |
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| T |
50445737 |
gttgatat |
50445730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 348
Target Start/End: Original strand, 52544929 - 52545018
Alignment:
| Q |
258 |
cattcagtcaaacaaccaataaaccaatggttgtatttcatccgtggtctgtttgctatgtttttcttcgctatatataacattggtcttt |
348 |
Q |
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| T |
52544929 |
cattcagtcaaatagccaataattcaatggttgtatttcattcgtggtgtg-tcgcaatgtttttcttcgctgtatatagcattgttcttt |
52545018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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