View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_61 (Length: 358)

Name: NF11385A_low_61
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_61
NF11385A_low_61
[»] chr2 (11 HSPs)
chr2 (160-343)||(16551778-16551959)
chr2 (1-52)||(16551619-16551670)
chr2 (185-262)||(11063518-11063595)
chr2 (195-262)||(1647266-1647333)
chr2 (161-251)||(33192243-33192332)
chr2 (160-262)||(41809183-41809285)
chr2 (205-262)||(28677642-28677699)
chr2 (193-262)||(41817198-41817267)
chr2 (201-262)||(43065429-43065490)
chr2 (163-251)||(5452367-5452454)
chr2 (163-227)||(12140597-12140661)
[»] chr3 (8 HSPs)
chr3 (164-262)||(43115086-43115184)
chr3 (200-264)||(11039317-11039381)
chr3 (262-306)||(34318012-34318056)
chr3 (188-263)||(26330289-26330364)
chr3 (266-308)||(27291005-27291047)
chr3 (193-257)||(27290872-27290936)
chr3 (188-260)||(37273166-37273238)
chr3 (264-312)||(41028955-41029003)
[»] chr7 (6 HSPs)
chr7 (161-262)||(34754749-34754850)
chr7 (212-262)||(26935547-26935597)
chr7 (161-259)||(33894660-33894758)
chr7 (264-337)||(991964-992036)
chr7 (201-262)||(46082066-46082127)
chr7 (168-252)||(39566153-39566237)
[»] chr4 (9 HSPs)
chr4 (193-262)||(1137742-1137811)
chr4 (163-262)||(28232575-28232674)
chr4 (193-259)||(3176075-3176141)
chr4 (161-224)||(18628492-18628555)
chr4 (164-211)||(51555712-51555759)
chr4 (161-227)||(8328058-8328124)
chr4 (265-306)||(4663801-4663842)
chr4 (201-262)||(33534148-33534209)
chr4 (313-341)||(23525731-23525759)
[»] chr8 (7 HSPs)
chr8 (163-227)||(39881662-39881726)
chr8 (262-337)||(8629002-8629077)
chr8 (164-262)||(6950352-6950450)
chr8 (161-253)||(11569396-11569488)
chr8 (175-259)||(14949899-14949983)
chr8 (205-262)||(10383915-10383972)
chr8 (201-262)||(30918143-30918203)
[»] chr6 (8 HSPs)
chr6 (195-262)||(7931699-7931766)
chr6 (161-227)||(2455875-2455941)
chr6 (201-262)||(30863276-30863337)
chr6 (199-262)||(31420975-31421038)
chr6 (169-264)||(32171330-32171425)
chr6 (200-262)||(9027608-9027670)
chr6 (161-259)||(34939777-34939875)
chr6 (218-262)||(6536977-6537021)
[»] chr5 (9 HSPs)
chr5 (176-262)||(35095740-35095826)
chr5 (164-262)||(7907911-7908010)
chr5 (161-236)||(11457154-11457229)
chr5 (161-260)||(38728434-38728533)
chr5 (265-335)||(40499780-40499848)
chr5 (164-214)||(583721-583771)
chr5 (188-238)||(2568712-2568762)
chr5 (164-214)||(13244493-13244543)
chr5 (193-262)||(35963271-35963340)
[»] chr1 (9 HSPs)
chr1 (160-262)||(37241759-37241862)
chr1 (195-262)||(11639389-11639456)
chr1 (205-260)||(31118075-31118130)
chr1 (264-306)||(4202233-4202275)
chr1 (164-226)||(14559038-14559100)
chr1 (160-262)||(44422729-44422831)
chr1 (161-262)||(3110021-3110122)
chr1 (164-197)||(25089398-25089431)
chr1 (264-336)||(45999392-45999467)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 160 - 343
Target Start/End: Original strand, 16551778 - 16551959
Alignment:
Q  160 aagcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16551778 aagcttatctattgacataaacacttgcgagattgtttagaagagcttatggaaagatcttatgacatatacataagttgtattcagcttatttccataa 16551877  T
Q  260 gctattttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatgtttatccaaacaaggccat 343  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  16551878 gctattttgttatagaaacaccttataattgagcacttatacgataacca--tttaattaagatgtttatccaaacaaggccat 16551959  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16551619 - 16551670
Alignment:
Q  1 atggtgctgaatgttctggttttattgcatttagttgtgatctattgaagta 52  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  16551619 atggtgctgaatgttctggttttattgcatttagttctgatttattgaagta 16551670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 11063595 - 11063518
Alignment:
Q  185 tacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| ||||| |||||||||||| ||| || ||||||||| | |||||||||| |  ||||||||| ||||||||    
T  11063595 tacgagactgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataagct 11063518  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 1647333 - 1647266
Alignment:
Q  195 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||||| |||||||||| | ||||||||||   |||||| ||| | |||||||||||||||||||    
T  1647333 tttagaagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagct 1647266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 33192332 - 33192243
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttat 251  Q
    |||||||||  ||||||||||||| | |||| ||||| ||||| |||||||||| |  ||||||||||| |||||| ||| | ||||||||    
T  33192332 agcttatctgctgacataaacactcatgagactgttt-gaagaacttatgaaaacagtttatgacatatccataagctgttttcagcttat 33192243  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 41809183 - 41809285
Alignment:
Q  160 aagcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    |||||||| | ||| |||||||||||  |||| || ||  |||||||| || ||| | |||||||||| | |||||||||| |  |||||||||||||||    
T  41809183 aagcttatttgttggcataaacacttgtgagactgattgtaagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttatttccataa 41809282  T
Q  260 gct 262  Q
    |||    
T  41809283 gct 41809285  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 28677642 - 28677699
Alignment:
Q  205 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||| | |||||||||| | |||||||||| | | |||||||||||||||||    
T  28677642 cttatgaaaacagcttatgacattttcataagttgttttcggcttatttccataagct 28677699  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 41817267 - 41817198
Alignment:
Q  193 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| |||  ||||||||| |||||||||||| |  |||| |||| | |||||||||||||||||||    
T  41817267 tgtttaggagaatttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagct 41817198  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 43065429 - 43065490
Alignment:
Q  201 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||| | |||||||||| | ||||| |||| | ||||||||||| |||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagct 43065490  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 5452454 - 5452367
Alignment:
Q  163 cttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttat 251  Q
    ||||||||||||||||  |||||  |||| ||||| |||||| ||||  ||| | |||||||||| |||||||| ||||| ||||||||    
T  5452454 cttatctattgacatattcactt-ggagactgtttggaagagattatagaaaaaacttatgacatgtacataagctgtattcagcttat 5452367  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 12140661 - 12140597
Alignment:
Q  163 cttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacat 227  Q
    |||||||| |||||||||||||||||| || ||||   ||| |||||||||| | ||||||||||    
T  12140661 cttatctactgacataaacacttacgaaatagtttgagagaacttatgaaaacaacttatgacat 12140597  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 43115184 - 43115086
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||||| |||||  |||||||||| |||||| ||||| ||| | |||||||||| | ||||| |||| | |||||||||||||||||||    
T  43115184 ttatctattgacataatcacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagct 43115086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 11039317 - 11039381
Alignment:
Q  200 aagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagctat 264  Q
    ||||||||||| ||| || ||||||||| | |||||||||| | |||||||| ||||||||||||    
T  11039317 aagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagctat 11039381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 34318056 - 34318012
Alignment:
Q  262 tattttgttatagaaataccttatacttgagcacttatacgataa 306  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||    
T  34318056 tattttgttatagaaatagcttatacttgagcactgataccataa 34318012  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 26330289 - 26330364
Alignment:
Q  188 gagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagcta 263  Q
    |||| |||||||||||||||||||||| | ||| |||||| | |||| ||| | | ||| ||||||||||||||||    
T  26330289 gagactgtttagaagagcttatgaaaacaacttctgacatgttcataggttcttttcaggttatttccataagcta 26330364  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 27291005 - 27291047
Alignment:
Q  266 ttgttatagaaataccttatacttgagcacttatacgataacc 308  Q
    |||||||||||||||||||||| | |||||||||| |||||||    
T  27291005 ttgttatagaaataccttatacctaagcacttatatgataacc 27291047  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 27290872 - 27290936
Alignment:
Q  193 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccat 257  Q
    ||||| |||||||||||||||| | ||||||||||   |||||| ||| | ||||||||||||||    
T  27290872 tgtttcgaagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccat 27290936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 37273238 - 37273166
Alignment:
Q  188 gagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 260  Q
    |||| ||||| | |||||||||| ||| | |||||||||| | |||||||||| | || ||||||||||||||    
T  37273238 gagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataag 37273166  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 41028955 - 41029003
Alignment:
Q  264 ttttgttatagaaataccttatacttgagcacttatacgataaccattt 312  Q
    |||||||||||||||| ||||||| | |||||||||| ||||| |||||    
T  41028955 ttttgttatagaaatagcttatacataagcacttatatgataagcattt 41029003  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 34754749 - 34754850
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 260  Q
    |||||||||||||||| ||||||||| |||| |||||   |||||||| ||||| |||||||||||     ||||||||| | |||||||||||||| ||    
T  34754749 agcttatctattgacacaaacacttatgagactgtttgagagagcttaagaaaacatcttatgacaagcctataagttgttttcagcttatttccatcag 34754848  T
Q  261 ct 262  Q
    ||    
T  34754849 ct 34754850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 26935547 - 26935597
Alignment:
Q  212 aaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||||||||| |||| |||||| ||| | |||||||||||||||||||    
T  26935547 aaagatcttatgaaatattcataagctgttttcagcttatttccataagct 26935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 33894758 - 33894660
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    |||||||| | |||||||| |||||  |||| |||||   |||||||||||||| | | |||||||| | |||||||||| | ||||||||||| ||||    
T  33894758 agcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataa 33894660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 337
Target Start/End: Complemental strand, 992036 - 991964
Alignment:
Q  264 ttttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatgtttatccaaacaa 337  Q
    |||||||||||||| | ||||||| | |||||||||| ||||| ||  || ||||||| |||||||||||||||    
T  992036 ttttgttatagaaacaacttatacgtaagcacttatatgataaaca-cttaaattaaggtgtttatccaaacaa 991964  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 46082127 - 46082066
Alignment:
Q  201 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||| | ||||||||||   |||||||||| | |||||||||| ||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagct 46082066  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 39566153 - 39566237
Alignment:
Q  168 ctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatt 252  Q
    |||||| ||||||||  | |||||  ||||||||||||||||| ||| || |||| |||| | |||||||||| | |||||||||    
T  39566153 ctattggcataaacatctgcgagacagtttagaagagcttatggaaacattttatcacatgtccataagttgttttcagcttatt 39566237  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 1137811 - 1137742
Alignment:
Q  193 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| ||| |||||||||| |||||||||||| | |||||||||| | ||| |||||||||||||||    
T  1137811 tgtttaggagaacttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagct 1137742  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 28232674 - 28232575
Alignment:
Q  163 cttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||||||||||| | ||||| ||||| ||||| ||||||||| || ||| | |||||||| |||  ||||||||| | || |||||||||| |||||    
T  28232674 cttatctattgacatgagcacttgcgagactgtttggaagagcttgtggaaacaacttatgacttatttataagttgttttcatcttatttccacaagct 28232575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 3176075 - 3176141
Alignment:
Q  193 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    ||||||| |||||||||||||| |||||||| ||| |  ||||||||| | ||||||||||||||||    
T  3176075 tgtttaggagagcttatgaaaacatcttatgtcatgtctataagttgttttcagcttatttccataa 3176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 18628492 - 18628555
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatga 224  Q
    |||||||||| ||||||||||||||  |||| ||||| | |||||||||||||| | |||||||    
T  18628492 agcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 51555712 - 51555759
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatga 211  Q
    ||||||| | |||||| |||||| ||||||||||||||||||||||||    
T  51555712 ttatctactcacataagcacttatgagattgtttagaagagcttatga 51555759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 8328058 - 8328124
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacat 227  Q
    ||||||||||||| ||||| |||||| |||| ||||| ||| |||||||||||| |  |||||||||    
T  8328058 agcttatctattggcataagcacttatgagactgtttggaatagcttatgaaaacaatttatgacat 8328124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 4663801 - 4663842
Alignment:
Q  265 tttgttatagaaataccttatacttgagcacttatacgataa 306  Q
    ||||||||||||||| ||||||| | ||||||||||||||||    
T  4663801 tttgttatagaaataacttatacataagcacttatacgataa 4663842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 33534148 - 33534209
Alignment:
Q  201 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||| |  || |||||||| |||||||||| | |||||||||| ||||||||    
T  33534148 agagcttatgaaaacaaattgtgacatatccataagttgttttcagcttattttcataagct 33534209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 23525731 - 23525759
Alignment:
Q  313 ttaattaagatgtttatccaaacaaggcc 341  Q
    |||||||||||||||||||||||||||||    
T  23525731 ttaattaagatgtttatccaaacaaggcc 23525759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 39881662 - 39881726
Alignment:
Q  163 cttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacat 227  Q
    ||||||||||| |||||||||||  |||||||||| ||||||||| |||||| | ||||||||||    
T  39881662 cttatctattggcataaacacttgtgagattgtttggaagagcttgtgaaaatagcttatgacat 39881726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 8629077 - 8629002
Alignment:
Q  262 tattttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatgtttatccaaacaa 337  Q
    |||||||||||||||||| ||||||  | |||||||||| ||||| || || || |||| ||||||||||||||||    
T  8629077 tattttgttatagaaatagcttataaataagcacttatatgataaacacttatacttaaaatgtttatccaaacaa 8629002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 6950450 - 6950352
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| || |||||||| ||  |||||||||| | |||||||||| ||| | | |||||||| |  ||||||||| | |||||||||||||||||||    
T  6950450 ttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttatttccataagct 6950352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 11569396 - 11569488
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttattt 253  Q
    |||||||||  || ||||| |||||  |||| ||||||  |||||||||| ||| | |||||||||| |||||||||||| | ||||||||||    
T  11569396 agcttatctgctggcataaccacttgtgagactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattt 11569488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 14949983 - 14949899
Alignment:
Q  175 cataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    |||||||| ||  |||| ||||||| |||||||||||||| | |||||||||| | |||||| ||| | ||||||||||| ||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataa 14949899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 10383972 - 10383915
Alignment:
Q  205 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||| | |||||||||| | |||||| ||| | |||||||||||||||||||    
T  10383972 cttatgaaaacagcttatgacattttcataagctgtttacagcttatttccataagct 10383915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 30918203 - 30918143
Alignment:
Q  201 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||| | ||| |||||| | |||||||||| | |||||||||||||||||||    
T  30918203 agagcttatgaaaacaacttgtgacattt-cataagttgttttcagcttatttccataagct 30918143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 7931699 - 7931766
Alignment:
Q  195 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||||||||| | |||||||||| | | |||||||| | |||||||||||| ||||||    
T  7931699 tttagaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagct 7931766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 2455941 - 2455875
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacat 227  Q
    ||||||||||  | ||||| ||||| |||||||||||||||||||||||| ||| | ||||||||||    
T  2455941 agcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacat 2455875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 30863337 - 30863276
Alignment:
Q  201 agagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||| | |||||||||| |||||||||||| | ||||||| ||| |||||||    
T  30863337 agagcttatgaaaacaacttatgacatgtacataagttgttttcagcttacttctataagct 30863276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 31421038 - 31420975
Alignment:
Q  199 gaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||||| | |||||  ||||| |||||||||| | |||||||||| ||||||||    
T  31421038 gaagagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataagct 31420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 32171330 - 32171425
Alignment:
Q  169 tattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagctat 264  Q
    ||||||||||| ||||| ||||| |||||   |||||||||||||| | |||||||||  | || ||| | | | |||||||||||||||||||||    
T  32171330 tattgacataagcacttgcgagactgtttgagagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctat 32171425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 9027670 - 9027608
Alignment:
Q  200 aagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||||||| ||| | |||||||||| | |||||||||| | |||||||||| ||||||||    
T  9027670 aagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 34939875 - 34939777
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    |||||||||| ||||||||||| ||  || | ||||| | |||||||| | ||| | |||||||||| | ||||| |||| | ||||||||||||||||    
T  34939875 agcttatctagtgacataaacatttgtgaaactgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataa 34939777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 6537021 - 6536977
Alignment:
Q  218 cttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||| | |||||||||| | |||||||||||||||||||    
T  6537021 cttatgacatgttcataagttgttttcagcttatttccataagct 6536977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 35095740 - 35095826
Alignment:
Q  176 ataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||||| | |||| ||||| |||||||||||| ||| |||||||||||| |||||| |  || | || ||||||||||||||||    
T  35095740 ataaacactaatgagactgtttggaagagcttatggaaatatcttatgacatgtacatatgccgttttcaacttatttccataagct 35095826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 7908010 - 7907911
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatctta-tgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| | ||||||||||||| |||| ||||| ||||| |||||||||| | | || ||| |||| |||||||||| | ||||||| || ||||||||    
T  7908010 ttatctaataacataaacacttatgagactgtttggaagaacttatgaaaacaacgtactgaaatattcataagttgttttcagcttaatttcataagct 7907911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 11457229 - 11457154
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataag 236  Q
    ||||||||||||| || ||||||||  |||| ||||| |||||||||||| ||| | |||||||||| | ||||||    
T  11457229 agcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataag 11457154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 38728533 - 38728434
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 260  Q
    |||||||||||||  |||||||| |  | |||||||| | |||||||||||||| | ||||||||||   | |||| ||| | |||||||||||||||||    
T  38728533 agcttatctattggtataaacacctgtgtgattgtttgggagagcttatgaaaatagcttatgacatgctcctaagctgttttcagcttatttccataag 38728434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 40499780 - 40499848
Alignment:
Q  265 tttgttatagaaataccttatacttgagcacttatacgataaccatttttaattaagatgtttatccaaac 335  Q
    ||||||||||||||| ||| ||| | |||||||||| ||||| |  ||||||||||| |||||||||||||    
T  40499780 tttgttatagaaataacttgtacataagcacttatatgataagc--ttttaattaagttgtttatccaaac 40499848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 583721 - 583771
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaa 214  Q
    ||||||||||  ||| |||||||| ||||||||||| ||||||||||||||    
T  583721 ttatctattgcgatacacacttacaagattgtttaggagagcttatgaaaa 583771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 2568762 - 2568712
Alignment:
Q  188 gagattgtttagaagagcttatgaaaagatcttatgacatatacataagtt 238  Q
    |||| ||||||||||| |||||||||| | |||||||||||| ||||||||    
T  2568762 gagactgtttagaagaacttatgaaaacagcttatgacatattcataagtt 2568712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 13244493 - 13244543
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaa 214  Q
    ||||||||||| ||||||||||| || | ||||| ||||||||||||||||    
T  13244493 ttatctattgaaataaacacttatgacactgtttggaagagcttatgaaaa 13244543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 35963340 - 35963271
Alignment:
Q  193 tgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    ||||||| ||| |||||| ||| | | |||||||| | |||||||||| | |||||||||||||||||||    
T  35963340 tgtttaggagaacttatggaaatagcgtatgacatgtccataagttgttttcagcttatttccataagct 35963271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 37241759 - 37241862
Alignment:
Q  160 aagcttatctattgacataaacacttacgagattgtttagaagagcttatg-aaaagatcttatgacatatacataag-ttgtatccagcttatttccat 257  Q
    ||||||||||| || ||||| ||||| ||||||||||||| ||||| |||| |||| | ||||||| |||| |||||| || | |||||||||||| |||    
T  37241759 aagcttatctactg-cataagcacttgcgagattgtttaggagagcatatgcaaaacaacttatgatatattcataagtttttttccagcttattttcat 37241857  T
Q  258 aagct 262  Q
    |||||    
T  37241858 aagct 37241862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 11639389 - 11639456
Alignment:
Q  195 tttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataagct 262  Q
    |||||||||||||||||||| | |||||||||| | |||||| ||| |  ||||||||| ||||||||    
T  11639389 tttagaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagct 11639456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 31118130 - 31118075
Alignment:
Q  205 cttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 260  Q
    |||||||||| |||||||||||| | ||| |||||| | |||||||||||||||||    
T  31118130 cttatgaaaacatcttatgacatgttcatcagttgttttcagcttatttccataag 31118075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Original strand, 4202233 - 4202275
Alignment:
Q  264 ttttgttatagaaataccttatacttgagcacttatacgataa 306  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  4202233 ttttgttatagaaataacttatacttaagcacttatatgataa 4202275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 14559100 - 14559038
Alignment:
Q  164 ttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgaca 226  Q
    ||||||| ||||||||||| || ||||||||||||| |||||| ||  ||||| |||||||||    
T  14559100 ttatctactgacataaacatttgcgagattgtttaggagagctaatagaaagagcttatgaca 14559038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 44422831 - 44422729
Alignment:
Q  160 aagcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataa 259  Q
    ||||||||||| ||  ||||||||||  |||| ||| | | |||||||||||||| | |||||||||| | |||||| ||  | |||||||||| |||||    
T  44422831 aagcttatctactgggataaacacttttgagactgtctgggagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataa 44422732  T
Q  260 gct 262  Q
    |||    
T  44422731 gct 44422729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 3110122 - 3110021
Alignment:
Q  161 agcttatctattgacataaacacttacgagattgtttagaagagcttatgaaaagatcttatgacatatacataagttgtatccagcttatttccataag 260  Q
    |||||| ||| |||||||| ||||| ||||| |||||  |||| |||||| ||| | ||| ||||| || ||||| |||| | | |||||||||||||||    
T  3110122 agcttaactagtgacataagcacttccgagactgtttgtaagaacttatgcaaacaacttgtgacacatccataacttgttttccgcttatttccataag 3110023  T
Q  261 ct 262  Q
    ||    
T  3110022 ct 3110021  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 25089431 - 25089398
Alignment:
Q  164 ttatctattgacataaacacttacgagattgttt 197  Q
    ||||| ||||||||||||||||||||||||||||    
T  25089431 ttatccattgacataaacacttacgagattgttt 25089398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 45999392 - 45999467
Alignment:
Q  264 ttttgttatagaaataccttatacttgagcacttatacgataaccatt---tttaattaagatgtttatccaaaca 336  Q
    |||||||||||||||| ||||||| ||||||||||| | ||||  |||   |||||||||| ||||||| ||||||    
T  45999392 ttttgttatagaaatagcttatacatgagcacttatgctataagaatttaatttaattaagttgtttattcaaaca 45999467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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