View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_68 (Length: 344)
Name: NF11385A_low_68
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 26438045 - 26437739
Alignment:
| Q |
22 |
agttttagatctacaaaagaacaaccttgttggaatcatacccaaaatctattttgagatgagagttttagagaccataaatttcaatggaaatcaattg |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||| |
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| T |
26438045 |
agttttagatctacaaaagaacaaccttgttggaatcatacccaaaatctattttgagatgagagttttagagactatgattttgaatggaaatcaattg |
26437946 |
T |
|
| Q |
122 |
aaggggcgattgcctaatgctattgccaaatgcgaaaacctcaaagttttggatcttggaaaaaataagatagacggctcctttcctagttggttagagt |
221 |
Q |
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| ||| | ||| ||| ||| |||||||||||| |||| || ||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
26437945 |
acgggaccattacctcatgttattgccaaatggaaaaaactggaagttttggatctaggagaaaataacatagagggctcatttcctagttggttagagt |
26437846 |
T |
|
| Q |
222 |
ctctcccagagttgcaggtccttgttttacgtgctaatcggttcaatggtactatctcaagtttgaaaagtaaccacacatttcctaagttgagggtttt |
321 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
26437845 |
ctctcccagagttgcaagtccttgttttacgtgcgaataggttcaatggtaccatctcatgtttgaaaaccaaccaaacatttcctaagttgagggtttt |
26437746 |
T |
|
| Q |
322 |
tgatgtc |
328 |
Q |
| |
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||||||| |
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| T |
26437745 |
tgatgtc |
26437739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 26451414 - 26451108
Alignment:
| Q |
22 |
agttttagatctacaaaagaacaaccttgttggaatcatacccaaaatctattttgagatgagagttttagagaccataaatttcaatggaaatcaattg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||||||| |
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| T |
26451414 |
agttttagatctacaaaagaacaaccttgttggaatcatacccaaaatctattttgagatgagagttttagagactatgattttgaatggaaatcaattg |
26451315 |
T |
|
| Q |
122 |
aaggggcgattgcctaatgctattgccaaatgcgaaaacctcaaagttttggatcttggaaaaaataagatagacggctcctttcctagttggttagagt |
221 |
Q |
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| ||| | ||| ||| ||| |||||||||||| |||| || ||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
26451314 |
acgggaccattacctcatgttattgccaaatggaaaaaactggaagttttggatctaggagaaaataacatagagggctcatttcctagttggttagagt |
26451215 |
T |
|
| Q |
222 |
ctctcccagagttgcaggtccttgttttacgtgctaatcggttcaatggtactatctcaagtttgaaaagtaaccacacatttcctaagttgagggtttt |
321 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
26451214 |
ctctcccagagttgcaagtccttgttttacgtgcgaataggttcaatggtaccatctcatgtttgaaaaccaaccaaacatttcctaagttgagggtttt |
26451115 |
T |
|
| Q |
322 |
tgatgtc |
328 |
Q |
| |
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||||||| |
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|
| T |
26451114 |
tgatgtc |
26451108 |
T |
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