View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385A_low_7 (Length: 502)
Name: NF11385A_low_7
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 21832039 - 21832347
Alignment:
| Q |
1 |
gttggattagtcacaccaaagactacatataatcaatatgagcaaacaccgacaaatatatattttatttaataagatggatgattttaaaaattgcgaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21832039 |
gttggattagtcacaccaaacactacatataatcgatatgagcaaacaccgacaaatatatattttatttaataagatggatgattttaaaaattgtgaa |
21832138 |
T |
|
| Q |
101 |
t-ttgcaattttcatgatcatcttccatatacggaagaaatttgttaaacttttaggattaaagttttgccttgttaattttccaataatctttgcactt |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21832139 |
tcttgcaattttcatgatcatcttccatatacggaagaaatttgttaaacttttagaattaaagttttgccttgttaattttccaataatctttgcactt |
21832238 |
T |
|
| Q |
200 |
tttacgtgtatcatcgttaacttctttttatgggtcataaaagggcagcagagagtgtggagaaataagtgttgccgataatccatttcctaattgaatg |
299 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21832239 |
tttatgtgtatcatcgttaacttctttttatgggtcataaaagggc-------agtgtggagaaataagtgttgccgataatccatttcccaattgaatg |
21832331 |
T |
|
| Q |
300 |
aagttgaattttatgt |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21832332 |
aagttgaattttatgt |
21832347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
371 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 472 - 502
Target Start/End: Original strand, 21832797 - 21832827
Alignment:
| Q |
472 |
caaacccgtaacaataaaaacataacctaac |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
21832797 |
caaacccgtaacaataaaaacataacctaac |
21832827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University