View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_70 (Length: 342)
Name: NF11385A_low_70
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 42154006 - 42153696
Alignment:
| Q |
20 |
aatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagctcctcaaacacgatttcatg |
119 |
Q |
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| T |
42154006 |
aatttgatctaagcaaaatataatttttaatactttgtttcgttaattactttttagaagtcttgaacgcacaatccagctcctcaaacacgatttcatg |
42153907 |
T |
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| Q |
120 |
atgtttgggtgtccttcatctcgccactacgatcatacatttctttttcataattgatcatatgttactatgacaccacatttctattcaaaatttctat |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42153906 |
atgtttgggtgtccttcatctcgccactgcgatcatacgtttctttttcataattgatcatatgttactatgacaccacatttctattcaaaatttcaat |
42153807 |
T |
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| Q |
220 |
gatttggatcttctcccacaaaaattttctacatcttctttgcacatcannnnnnnnctctcctagttacttacttgatgacagatcatcttccgttaac |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42153806 |
gatttggatcttctcccacaaaaattttctacatcttctttgcacatcatttttcttctctcctagttacttacttgatgacagatcatcttccgttatt |
42153707 |
T |
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| Q |
320 |
tttaacatatt |
330 |
Q |
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||||||||||| |
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| T |
42153706 |
tttaacatatt |
42153696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 42293977 - 42294044
Alignment:
| Q |
20 |
aatttgatctaagcaaaatataattttcaatactttgtttcgttaattactttttagaagtcttgaacg |
88 |
Q |
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||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||| |||||| ||||||| |
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| T |
42293977 |
aatttgatccaagcaaaatttaattttctttactt-gtttcattaattacttttcagaagtgttgaacg |
42294044 |
T |
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