View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_71 (Length: 339)

Name: NF11385A_low_71
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_71
NF11385A_low_71
[»] chr1 (4 HSPs)
chr1 (16-331)||(11780115-11780431)
chr1 (138-310)||(10424593-10424765)
chr1 (140-310)||(1624838-1625008)
chr1 (227-286)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (21-317)||(17158545-17158845)
[»] chr2 (1 HSPs)
chr2 (21-321)||(12101765-12102063)
[»] chr6 (4 HSPs)
chr6 (132-317)||(14977618-14977803)
chr6 (24-195)||(11776308-11776482)
chr6 (139-195)||(9352421-9352477)
chr6 (147-195)||(24353638-24353686)
[»] chr5 (3 HSPs)
chr5 (132-310)||(5781902-5782080)
chr5 (24-310)||(19069420-19069709)
chr5 (138-195)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (138-305)||(16311632-16311799)
chr3 (138-305)||(18488416-18488583)
chr3 (138-305)||(18492626-18492793)
chr3 (127-290)||(19829018-19829181)
chr3 (138-276)||(16314023-16314161)
chr3 (138-276)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (138-294)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 11780431 - 11780115
Alignment:
Q  16 ggacatcattgtcgtcaacatctttcagctttccactgcgtaacgtgtttgacaacatttctagtgaggagctgctactagcttcgccagtgtttgaaat 115  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  11780431 ggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaat 11780332  T
Q  116 tgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttac 214  Q
    |||||||| | |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11780331 tgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 11780232  T
Q  215 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780231 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 11780132  T
Q  315 gttgagccagatgatgt 331  Q
    |||||||  ||||||||    
T  11780131 gttgagcacgatgatgt 11780115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 310  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 310
Target Start/End: Complemental strand, 1625008 - 1624838
Alignment:
Q  140 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtggaa 239  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  240 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 310  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  227 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 286  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 17158845 - 17158545
Alignment:
Q  21 tcattgtcgtcaacatctttcagctttccactgcgtaacgtgtttgacaacatttctagtgaggagctgctactagcttcgccagtgtttgaaattgttt 120  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||  |||||| ||| ||| |||||||||||||||||||||    
T  17158845 tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt 17158746  T
Q  121 cccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactc 216  Q
    ||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||     
T  17158745 cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactg 17158646  T
Q  217 caacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgt 316  Q
    | || ||||||||||||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| |||||||||||||||    
T  17158645 cgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgt 17158546  T
Q  317 t 317  Q
    |    
T  17158545 t 17158545  T

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Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 12101765 - 12102063
Alignment:
Q  21 tcattgtcgtcaacatctttcagctttccactgcgtaacgtgtttgacaacatttctagtgaggagctgctactagcttcgccagtgtttgaaattgttt 120  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||| |||||||| | || |||  | | ||||||||||||| |||    
T  12101765 tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt 12101864  T
Q  121 cccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactcc 217  Q
    |||   |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | |  |||||||||||| |    
T  12101865 ccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactac 12101964  T
Q  218 aacgctctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaat 313  Q
     |  |         ||||||||||||    ||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12101965 gatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaat 12102055  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 132 - 317
Target Start/End: Original strand, 14977618 - 14977803
Alignment:
Q  132 gatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatg 231  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     || |||||||||||| | ||||| ||  |||    
T  14977618 gatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctacgctatcttatg 14977717  T
Q  232 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgtt 317  Q
    ||||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||    
T  14977718 atgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtt 14977803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcgtaacgtgtttgacaacatttctagtgaggagctgctactagcttcgccagtgtttgaaattgtttccc 123  Q
    ||||||||||  ||||||||||||||| | | ||| | ||||||||| ||||||  ||||||| ||| ||  | | | |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  124 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  139 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  147 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 132 - 310
Target Start/End: Complemental strand, 5782080 - 5781902
Alignment:
Q  132 gatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatg 231  Q
    ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   || || || ||||    
T  5782080 gatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttacactttctgatg 5781981  T
Q  232 atgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 310  Q
    |||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781980 atgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcgtaacgtgtttgacaacatttctagtgaggagctgctactagcttcgccagtgtttgaaattgtttccc 123  Q
    ||||||||||  ||||||||||||||| | |  || | ||||||||| ||||||  | ||||||||| ||  ||| |||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  124 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaac 220  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  221 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 310  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  127 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctc 226  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  227 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 290  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtc 276  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtc 276  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 294
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtcgacgatgttactccaacgctctcggatgatgtgg 237  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 294  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

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