View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_73 (Length: 336)
Name: NF11385A_low_73
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 12843654 - 12843354
Alignment:
| Q |
16 |
aaggagcaagtggaatgcagagaagcgtgatgaagatcaagttgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagct |
115 |
Q |
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| T |
12843654 |
aaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagct |
12843555 |
T |
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| Q |
116 |
tggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtcttctgttaagatcgattaatcattcttatg |
215 |
Q |
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| T |
12843554 |
tggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatg |
12843455 |
T |
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| Q |
216 |
ttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcactta |
315 |
Q |
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| T |
12843454 |
ttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcactta |
12843355 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
12843354 |
t |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 51 - 246
Target Start/End: Original strand, 12861862 - 12862057
Alignment:
| Q |
51 |
atcaagttgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaa |
150 |
Q |
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| T |
12861862 |
atcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaa |
12861961 |
T |
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| Q |
151 |
tttcaatcaagattcaagattatagtgttaatgtcttctgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
246 |
Q |
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| T |
12861962 |
tttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
171 |
tatagtgttaatgtcttctgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
245 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 316
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
269 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
316 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 13125629 - 13125592
Alignment:
| Q |
149 |
aatttcaatcaagattcaagattatagtgttaatgtct |
186 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtct |
13125592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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