View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385A_low_86 (Length: 325)

Name: NF11385A_low_86
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385A_low_86
NF11385A_low_86
[»] chr6 (10 HSPs)
chr6 (21-182)||(31055747-31055912)
chr6 (206-309)||(31056786-31056891)
chr6 (209-299)||(31080662-31080752)
chr6 (206-292)||(31045963-31046049)
chr6 (206-263)||(31027122-31027179)
chr6 (206-293)||(31096265-31096352)
chr6 (206-263)||(31035533-31035590)
chr6 (214-283)||(31059173-31059242)
chr6 (206-263)||(31110547-31110604)
chr6 (206-297)||(31070017-31070109)
[»] scaffold0018 (1 HSPs)
scaffold0018 (206-297)||(170676-170767)
[»] scaffold0202 (1 HSPs)
scaffold0202 (233-280)||(4968-5015)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 31055747 - 31055912
Alignment:
Q  21 agttgaggacaacttaacctactgtata----cgatcatttctcacatcactcatgatttttcaaaagcttattgattgtcatccaacatatcatgattc 116  Q
    |||||||||||||||||| |||||||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31055747 agttgaggacaacttaacttactgtatatatacgatcatttctcgcatcactcatgatttttcaaaagcttattgattgtcatccaacatatcatgattc 31055846  T
Q  117 agtagttggacgacaaaatattgttgaacccatgatcatttatacttcactaaatgtgatcaagca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31055847 agtagttggacgacaaaatattgttgaacccatgatcatttatactccactaaatgtgatcaagca 31055912  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 31056786 - 31056891
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg--cacccaatctcatattgctg 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  31056786 atcgagtatgtgttaaaacaggcaggaaggtttacatataaaataagattgtatatcaaatattaactcatagtttggcacacccaatctcatattgctg 31056885  T
Q  304 atgtcc 309  Q
     |||||    
T  31056886 ctgtcc 31056891  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 209 - 299
Target Start/End: Original strand, 31080662 - 31080752
Alignment:
Q  209 gagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcatatt 299  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||| ||||||| | |||| ||||||||||| |  || ||||||||||||    
T  31080662 gagtatgtgttaaaacatgcacgaaggtttacctataaaataagagtgtatataacttatcaactcatagttggagactcaatctcatatt 31080752  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 31045963 - 31046049
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatc 292  Q
    |||||||||||||||||||| ||| |||| ||| | |||||||||||| |||||||||   |||| ||||||||| || ||||||||    
T  31045963 atcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatcacccattatctcatagttggggacccaatc 31046049  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 31027122 - 31027179
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 263  Q
    |||||||||||||||||||| |||   |||||||| |||||||||||| |||||||||    
T  31027122 atcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca 31027179  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 31096352 - 31096265
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatct 293  Q
    |||||||||  ||||||| | |||  ||| ||||| |||||||||||| |||| |||| |||||||| ||||||| || |||||||||    
T  31096352 atcgagtatacgttaaaataggcactaagttttacttataaaataagagtgtacatcacttattaacacatagttggggacccaatct 31096265  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 31035533 - 31035590
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 263  Q
    ||||||||||||||||||||  || |||||||| | ||||||| |||| |||||||||    
T  31035533 atcgagtatgtgttaaaacagtcatgaaggttttcctataaaagaagagtgtatatca 31035590  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 31059173 - 31059242
Alignment:
Q  214 tgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg 283  Q
    ||||| |||||| |||  ||| ||||| |||||||||||| ||||||||| ||| | |||||||||||||    
T  31059173 tgtgtaaaaacaggcacaaagatttacctataaaataagagtgtatatcatttacttactcatagtttgg 31059242  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 31110547 - 31110604
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 263  Q
    |||||||||||||||||||| | | ||| |||||| |||||||||||  |||||||||    
T  31110547 atcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 31110604  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 31070017 - 31070109
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcac-ccaatctcata 297  Q
    |||||| |||||| ||||||  ||| ||| ||||| |||||||||||| |||||||||   ||||| |||||||| || || |||||||||||    
T  31070017 atcgaggatgtgtcaaaacagtcagaaagatttacctataaaataagagtgtatatcaccaattaagtcatagttggggactccaatctcata 31070109  T

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Target: scaffold0018 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 170767 - 170676
Alignment:
Q  206 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcata 297  Q
    ||||||||| ||||||||||   | |||||||||| |||||||||||| ||| ||||| |||||||| ||||||| || |||||||||||||    
T  170767 atcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatcacttattaacccatagttggggacccaatctcata 170676  T

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Target: scaffold0202 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 5015 - 4968
Alignment:
Q  233 aggtttacatataaaataagaatgtatatcaattattaactcatagtt 280  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||||||    
T  5015 aggtttatctataaaataagagtgtatatcacttattaactcatagtt 4968  T

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