View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385A_low_99 (Length: 310)
Name: NF11385A_low_99
Description: NF11385A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385A_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 3302663 - 3302507
Alignment:
| Q |
141 |
attaacaactcttactagataatgagtttttctattcataggcttataggctttaagccaccaacaatgttttccctttattgataataatgtactaata |
240 |
Q |
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| T |
3302663 |
attaacaactcttactagataatgagtttttctattcataggcttataggctttaagccaccaacaatgttttccctttattgataataatgtactaata |
3302564 |
T |
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| Q |
241 |
atcaccatatnnnnnnnnnnnntgtcaagaacatttttagctttctatgatgtccat |
297 |
Q |
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| T |
3302563 |
atcaccatacaaaaaacaaaaatgtcaagaacatttttagctttctataatgtccat |
3302507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 3302813 - 3302693
Alignment:
| Q |
26 |
cacagacaccggtaataatcgaagaaaataaaagacattaaatacaatcaaatgtgttgacactgacacactttcaatatgatgtgtcggtgtttcatag |
125 |
Q |
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||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3302813 |
cacagacactggtaataatcggagaaattaaaagacattaaatacaatcaaatgtgttgacaccgacacactttcaatatgatgtgtcggtgtttcatag |
3302714 |
T |
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| Q |
126 |
aatataactattgtaattaac |
146 |
Q |
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||||||||||||||||||||| |
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| T |
3302713 |
aatataactattgtaattaac |
3302693 |
T |
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