View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_high_12 (Length: 340)

Name: NF11385_high_12
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_high_12
NF11385_high_12
[»] chr4 (1 HSPs)
chr4 (17-334)||(26572830-26573162)
[»] chr2 (13 HSPs)
chr2 (62-334)||(10377975-10378263)
chr2 (220-324)||(10350221-10350325)
chr2 (243-334)||(10345736-10345827)
chr2 (17-179)||(10369677-10369832)
chr2 (159-334)||(10342064-10342254)
chr2 (226-299)||(10369915-10369988)
chr2 (243-334)||(10339246-10339337)
chr2 (16-118)||(10339127-10339228)
chr2 (159-215)||(10363499-10363555)
chr2 (32-83)||(10363348-10363399)
chr2 (49-83)||(10350132-10350166)
chr2 (248-282)||(10363579-10363613)
chr2 (159-215)||(10368772-10368828)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 26572830 - 26573162
Alignment:
Q  17 aagttggttaaaatttgttagtttagttaggattactacatgaagtgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaa 116  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  26572830 aagttggttaacatttgttagtttagttaggattactacatgaagtgtatcatatattcagaataatcaactttttttattcaatcaattccaaacaaaa 26572929  T
Q  117 aagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacatacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacat 216  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26572930 aagaaagcctcgcctaaaaggaaaatgtgctctgcaaattgacatacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacat 26573029  T
Q  217 aat---------------agtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctga 301  Q
    |||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573030 aatcaccaaaacagtatgagtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctga 26573129  T
Q  302 aatttgtttaagaatgatttctttctctgcttc 334  Q
    |||||||||||||||||||||||||||| ||||    
T  26573130 aatttgtttaagaatgatttctttctcttcttc 26573162  T

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Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 62 - 334
Target Start/End: Original strand, 10377975 - 10378263
Alignment:
Q  62 tgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaaaagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacat 161  Q
    ||||| ||||||| ||||||||||||       ||| |||||||||||||||||||  |||||| |  ||||||||||||||||  ||||||||| ||||    
T  10377975 tgtataatatattaagaataatcaactttttttatttaatcaattccaaacaaaaagaaaaacc-cacctaaaaggaaaatgtgcactgcaaattcacat 10378073  T
Q  162 acaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgc--atggttga 244  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||               ||||| |||||||||||  ||||| ||    
T  10378074 acaaacactgaagatatgaaataaattttctctaacattcatctgttgctaacaaaatcaccaaaaaagtatgagtttgaccttttatgcatatggtaga 10378173  T
Q  245 gccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 334  Q
    |  |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||||||||    
T  10378174 gtactaaaggtcttagttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctctgcttc 10378263  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 10350221 - 10350325
Alignment:
Q  220 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||| |    
T  10350221 agtttaaccttttatgcatggttgagccctaaagttcttagttctgcattccttcatcaattttttctgtcacattctctgaaattttcttaagaatgtt 10350320  T
Q  320 ttctt 324  Q
    |||||    
T  10350321 ttctt 10350325  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 10345736 - 10345827
Alignment:
Q  243 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 334  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| |||| ||||    
T  10345736 gagccctgaagttcttagttctgcattccttcatcaattttttctttcacattctctgaaattttcttaagaatgttttcttcctcttcttc 10345827  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 10369677 - 10369832
Alignment:
Q  17 aagttggttaaaatttgttagtttagttaggattactacatgaagtgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaaa 116  Q
    ||||| |||||||||| ||||| ||||||||| ||||||     |||||| |||||||||||||||||||        ||||||||||||  ||||||||    
T  10369677 aagttagttaaaatttattagtatagttaggactactac-----gtgtatgatatattcagaataatcaaaattttctattcaatcaattataaacaaaa 10369771  T
Q  117 aagaaaacctcgactaaaaggaaaatgtgttctgcaaattgacatacaaacactgaagatatg 179  Q
    || |||   || | ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  10369772 aaaaaat--tcaattaaaaggaaaatgtgctctgcaaattcacatacaaacactgaagatatg 10369832  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 334
Target Start/End: Original strand, 10342064 - 10342254
Alignment:
Q  159 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataacataat---------------agtttaaccttttatgcatggttg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||               ||||||||| ||||||||||||      
T  10342064 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgttaacaaaatcaccaaaaaagtatgagtttaaccatttatgcatggtaa 10342163  T
Q  244 agccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 334  Q
    ||  ||||| | ||||||||| |  |||||||||||||| ||||| |||||||||   ||||||||| |||| | ||||||  ||||||||    
T  10342164 agtactaaaatacttagttctactttccttcatcaatttcttcttccacattctcaagaatttgtttcagaacgttttcttcatctgcttc 10342254  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 10369915 - 10369988
Alignment:
Q  226 accttttatgcatggttgagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctct 299  Q
    |||||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  10369915 accttttatgcatggtggagcacttaagttcttagttctgcattccttcatcaatttcttcttccacattctct 10369988  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 10339246 - 10339337
Alignment:
Q  243 gagccctaaagttcttagttctgcaatccttcatcaattttttctttcacattctctgaaatttgtttaagaatgatttctttctctgcttc 334  Q
    |||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||||| |||| ||||    
T  10339246 gagcactaaagttcttggttctgcattccttcatcaatttcttcttccacattctctagaatttgtttcagaatgttttcttcctcttcttc 10339337  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 10339127 - 10339228
Alignment:
Q  16 caagttggttaaaatttgttagtttagttaggattactacatgaagtgtatcatatattcagaataatcaacnnnnnnnattcaatcaattccaaacaaa 115  Q
    |||||| ||||||||||| ||| || |||||||||||||||| | ||||||| |||||||||||||||||||       ||||||||||||||||| |||    
T  10339127 caagttagttaaaatttgatagcttggttaggattactacataatgtgtatcctatattcagaataatcaac-ttttttattcaatcaattccaaaaaaa 10339225  T
Q  116 aaa 118  Q
    |||    
T  10339226 aaa 10339228  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 10363499 - 10363555
Alignment:
Q  159 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  10363499 catacaaacaccgaagatatgaaataaattttctctaacatttatctcttgttaaca 10363555  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 10363348 - 10363399
Alignment:
Q  32 tgttagtttagttaggattactacatgaagtgtatcatatattcagaataat 83  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  10363348 tgttagtttagttagggttactacataaagtgtaccatatattcagaataat 10363399  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 10350132 - 10350166
Alignment:
Q  49 ttactacatgaagtgtatcatatattcagaataat 83  Q
    ||||||||||||||||||||||||| |||||||||    
T  10350132 ttactacatgaagtgtatcatatatccagaataat 10350166  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 10363579 - 10363613
Alignment:
Q  248 ctaaagttcttagttctgcaatccttcatcaattt 282  Q
    |||||||||||||||||||| ||||||||||||||    
T  10363579 ctaaagttcttagttctgcattccttcatcaattt 10363613  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 10368772 - 10368828
Alignment:
Q  159 catacaaacactgaagatatgaaataaattttctctaacatttatctgttgataaca 215  Q
    ||||||| || ||||||| ||||| |||||||||| ||||||||||| ||| |||||    
T  10368772 catacaatcagtgaagatgtgaaacaaattttctccaacatttatcttttgttaaca 10368828  T

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