View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385_high_13 (Length: 337)
Name: NF11385_high_13
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 41735184 - 41734874
Alignment:
| Q |
14 |
gacatcaatttaattgcgaaaatgtcttttatcttgtaattcccatttttcactagtgatgggcgatagtcatatattcttcacaccaattcaatatata |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735184 |
gacatcaatttaattgcgaaaatgtcttttatcttgtaattcccattttgcactagtgatgggcgatagtcatatattcttcacaccaattcaatatata |
41735085 |
T |
|
| Q |
114 |
gttggcctaat---cagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacatcaccaattcaatctgcc |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735084 |
gttggcctaatgatcagattggtaatctaccatatgccaaccttggtagagtatttatacacttttaccatccatcttgacatcaccaattcaatctgcc |
41734985 |
T |
|
| Q |
211 |
actgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctcccttggcttattcttttcttcattctaacaggtactcataatttgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41734984 |
actgatcataatatgatgaagcaaaatctattagtgaaaataatcactcttctcccttggcttattcttttcttcattataacaggtactcataatttgc |
41734885 |
T |
|
| Q |
311 |
tagcatctcat |
321 |
Q |
| |
|
||||||||||| |
|
|
| T |
41734884 |
tagcatctcat |
41734874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University