View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_high_14 (Length: 336)
Name: NF11385_high_14
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 10163198 - 10162890
Alignment:
| Q |
19 |
tgtgcatcacagatacatgtttacacatctatatttgtccctattcagaatggtcatcctttagatgaagaactacagttaacttcgggcattgttcctg |
118 |
Q |
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| T |
10163198 |
tgtgcatcacagatacttgtttacacatctatatttgtccttattcagaatggtcatcctttagatgaagaactacagttaactttgggcattgttcctg |
10163099 |
T |
|
| Q |
119 |
gtaggcaggctcagatgcgaggttggaacttgcaaatatgcaaccaagagcaagtgctgtagacgttatccgttttagcgcatctattacacctagcaat |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10163098 |
gtaggcagactcagatgcgaggttggaacttgcaaatatgcaaccaagagcaagtgctgtagacgttatccgttttagcgcatctagtacacctagcaat |
10162999 |
T |
|
| Q |
219 |
tcaagtggaggatctgaagcagatgatattgagtcaaaaggtgatgtttacatatggggagaggtttttgcagatggatttccttcaaagacagatgtgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10162998 |
tcaagtggaggatctgaagcagatgatattgagtcaaaaggtgatgtttacatatggggagaggtttttgcagatggatttccttcaaagacagatgtgt |
10162899 |
T |
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| Q |
319 |
tgaccccta |
327 |
Q |
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| T |
10162898 |
tgaccccta |
10162890 |
T |
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