View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_high_2 (Length: 562)

Name: NF11385_high_2
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_high_2
NF11385_high_2
[»] chr2 (7 HSPs)
chr2 (252-543)||(6307098-6307377)
chr2 (1-144)||(6306699-6306842)
chr2 (251-302)||(39423894-39423942)
chr2 (252-302)||(2318890-2318937)
chr2 (252-302)||(3555251-3555298)
chr2 (252-302)||(9076447-9076494)
chr2 (252-302)||(36755468-36755515)
[»] chr4 (6 HSPs)
chr4 (1-140)||(39538900-39539039)
chr4 (252-302)||(147320-147367)
chr4 (252-302)||(18831350-18831397)
chr4 (252-302)||(18831697-18831744)
chr4 (252-302)||(46661294-46661341)
chr4 (252-302)||(51692899-51692946)
[»] scaffold0128 (1 HSPs)
scaffold0128 (1-141)||(20633-20773)
[»] chr7 (10 HSPs)
chr7 (6-141)||(33809090-33809225)
chr7 (252-302)||(2640179-2640226)
chr7 (252-302)||(48788804-48788851)
chr7 (252-302)||(5457287-5457334)
chr7 (252-302)||(13386127-13386174)
chr7 (252-302)||(24389165-24389212)
chr7 (252-302)||(27396975-27397022)
chr7 (252-302)||(28469011-28469058)
chr7 (252-302)||(28469388-28469435)
chr7 (252-302)||(45010984-45011031)
[»] chr5 (13 HSPs)
chr5 (252-302)||(16156856-16156903)
chr5 (252-302)||(20840817-20840864)
chr5 (251-316)||(5024006-5024068)
chr5 (252-302)||(5993890-5993937)
chr5 (252-302)||(6150455-6150502)
chr5 (251-305)||(11740685-11740736)
chr5 (252-302)||(14194424-14194471)
chr5 (252-302)||(16157235-16157282)
chr5 (252-302)||(18247087-18247134)
chr5 (252-302)||(20814137-20814184)
chr5 (252-302)||(20814515-20814562)
chr5 (252-302)||(20840534-20840581)
chr5 (252-302)||(21265522-21265569)
[»] chr3 (9 HSPs)
chr3 (252-302)||(42342792-42342839)
chr3 (251-300)||(46475159-46475205)
chr3 (252-302)||(9294338-9294385)
chr3 (252-302)||(33689383-33689430)
chr3 (252-302)||(33689759-33689806)
chr3 (252-302)||(40033836-40033883)
chr3 (252-302)||(40758148-40758195)
chr3 (252-302)||(41558009-41558056)
chr3 (251-313)||(53756734-53756793)
[»] chr1 (14 HSPs)
chr1 (252-302)||(41098734-41098781)
chr1 (252-302)||(183222-183269)
chr1 (252-302)||(6367563-6367610)
chr1 (252-302)||(17661853-17661900)
chr1 (252-302)||(19515820-19515867)
chr1 (252-302)||(23209707-23209754)
chr1 (252-302)||(24009576-24009623)
chr1 (252-302)||(26024424-26024471)
chr1 (252-302)||(30711707-30711754)
chr1 (252-302)||(32917640-32917687)
chr1 (252-302)||(34464450-34464497)
chr1 (253-303)||(35152711-35152758)
chr1 (252-302)||(36694283-36694330)
chr1 (252-302)||(36710384-36710431)
[»] scaffold0775 (1 HSPs)
scaffold0775 (251-302)||(4963-5011)
[»] chr8 (4 HSPs)
chr8 (251-302)||(33357499-33357547)
chr8 (252-302)||(16388584-16388631)
chr8 (252-310)||(38956052-38956107)
chr8 (252-302)||(39071677-39071724)
[»] scaffold0707 (1 HSPs)
scaffold0707 (252-302)||(6459-6506)
[»] chr6 (4 HSPs)
chr6 (252-302)||(3059636-3059683)
chr6 (252-302)||(30726139-30726186)
chr6 (252-302)||(33517914-33517961)
chr6 (252-302)||(33647331-33647378)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 252 - 543
Target Start/End: Original strand, 6307098 - 6307377
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagctaatttaaaaatatttgaactgctccgccaatttattgacttattgact 351  Q
    |||||||||||||||| ||||||| ||||    |||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||    
T  6307098 caatttttaaacgaccactaattgcaaga----tgaaatacatatttaagccaatttaaaaatatttgaactgctccgccaatttat--------tgact 6307185  T
Q  352 atgtgaatgtaaacaatatctaaccgcacaaaactgtttctcattagagttcaatgaacttggctaagtaatgataaaaagttatacatattttcaaacc 451  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6307186 atgtgaatgtaaacaatatctaactgcacaaaactgtttctcattagagttcaatgaacttggctaagtaatgataaaaagttatacatactttcaaacc 6307285  T
Q  452 cccgtgcacatctttcactcattttgttcttggatcatgtatacctataaaattgcagacaaagaaatcaacttcttacctttcctgtactt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6307286 cccgtgcacatctttcactcattttgttcttggatcatgtatacctataaaattgcagacaaagaaatcaacttcttacctttcctgtactt 6307377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 6306699 - 6306842
Alignment:
Q  1 atgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacgg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||| ||||    
T  6306699 atgacataattaataagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgccgtcggtgaaagaaggatttgaattagcgacgg 6306798  T
Q  101 attcttcaggtcgagaagtgatactgaatgagtttgcttcggtt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6306799 attcttcaggtcgagaagtgatactgaatgagtttgcttcggtt 6306842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Original strand, 39423894 - 39423942
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||| |||    |||||||||||||||||||    
T  39423894 tcaatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 39423942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 2318890 - 2318937
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||   |||  |||||||||||||||||||    
T  2318890 caatttttaaacgacccctaattg---gaaggatgaaatacatatttaagc 2318937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 3555298 - 3555251
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  3555298 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 3555251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 9076447 - 9076494
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| ||||   || ||||||||||||||||    
T  9076447 caatttttaaacgacccctaattgcaaga---ataaaatacatatttaagc 9076494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 36755468 - 36755515
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  36755468 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 36755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39538900 - 39539039
Alignment:
Q  1 atgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacgg 100  Q
    ||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||| ||||    
T  39538900 atgacgtaattaacaagaagctaaacccaggtgaaaggatcgatgtgaatatctttggtggcaacgccgtcggtgaaagaaggatttgaattagcgacgg 39538999  T
Q  101 attcttcaggtcgagaagtgatactgaatgagtttgcttc 140  Q
    ||||||| ||| |||||||||||| |||||||||||||||    
T  39539000 attcttcgggtggagaagtgataccgaatgagtttgcttc 39539039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 147367 - 147320
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||||| |    |||||||||||||||||||    
T  147367 caatttttaaacgacccctaattgtagg---gatgaaatacatatttaagc 147320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 18831397 - 18831350
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||||    || ||||||||||||||||    
T  18831397 caatttttaaacgacccctaattgtaag---gatcaaatacatatttaagc 18831350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 18831697 - 18831744
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  18831697 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 18831744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 46661294 - 46661341
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  46661294 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 46661341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 51692899 - 51692946
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  51692899 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 51692946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 20633 - 20773
Alignment:
Q  1 atgacataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacgg 100  Q
    ||||||||||||||||||||||||| |   | |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||    
T  20633 atgacataattaacaagaagctaaatccaagcgaaaggatcgatgtgaatatctttggtggcgatgctgtcggtgaaagaaggatttgaattagcgacgg 20732  T
Q  101 attcttcaggtcgagaagtgatactgaatgagtttgcttcg 141  Q
    ||||||| ||| |||||||||||| ||||||||||||||||    
T  20733 attcttcgggtggagaagtgataccgaatgagtttgcttcg 20773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 33809090 - 33809225
Alignment:
Q  6 ataattaacaagaagctaaaccagggtgaaaggatcgatgtgaatatctttggtggcgacgttgtccgtgaaagaaggatttgaattagctacggattct 105  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||||| ||| ||||     
T  33809090 ataattaacaagaagctaaacccaggtcaaaggatcgatgtgaatatcttttgtggcgacgccgtcggtgaaagaaggatttgaattagcgacgcattca 33809189  T
Q  106 tcaggtcgagaagtgatactgaatgagtttgcttcg 141  Q
    || |||||||||||||||| ||||||||||||||||    
T  33809190 tcgggtcgagaagtgataccgaatgagtttgcttcg 33809225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 2640226 - 2640179
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||    
T  2640226 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 2640179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 48788851 - 48788804
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  48788851 caatttttaaacgacccctaattgcaaga---atgaaatacatatttaagc 48788804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 5457287 - 5457334
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  5457287 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 5457334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 13386127 - 13386174
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||   ||| ||||||||||||||||    
T  13386127 caatttttaaacgacccctaattgcaag---tattaaatacatatttaagc 13386174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 24389165 - 24389212
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  24389165 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 24389212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 27396975 - 27397022
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  27396975 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 27397022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 28469058 - 28469011
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  28469058 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 28469011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 28469388 - 28469435
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  28469388 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 28469435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 45010984 - 45011031
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  45010984 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 45011031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 16156903 - 16156856
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||||||    
T  16156903 caatttttaaacgacccctaattgcaag---tatgaaatacatatttaagc 16156856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 20840817 - 20840864
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||    
T  20840817 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 20840864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 5024068 - 5024006
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagctaatttaaaaatat 316  Q
    ||||||||||||||||||||||||| |||    ||||||||||||||||||| ||  |||||||||    
T  5024068 tcaatttttaaacgacccctaattgcaag---gatgaaatacatatttaagccaagataaaaatat 5024006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 5993937 - 5993890
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  5993937 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 5993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 6150502 - 6150455
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  6150502 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 6150455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 11740736 - 11740685
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagctaa 305  Q
    ||||||||||||||||||||||||| |||    ||||||||||||||||| ||||    
T  11740736 tcaatttttaaacgacccctaattgcaag---gatgaaatacatatttaaactaa 11740685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 14194471 - 14194424
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  14194471 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 14194424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 16157235 - 16157282
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  16157235 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 16157282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 18247134 - 18247087
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  18247134 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 18247087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 20814184 - 20814137
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||| |||||||||||    |||||||||||||||||||    
T  20814184 caatttttaaacgacctctaattgtaag---gatgaaatacatatttaagc 20814137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 20814515 - 20814562
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  20814515 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 20814562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 20840581 - 20840534
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  20840581 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 20840534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 21265522 - 21265569
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||| ||||||||||    |||||||||||||||||||    
T  21265522 caatttttaaacgacccttaattgtaag---gatgaaatacatatttaagc 21265569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 42342839 - 42342792
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||||    |||||||||||||||||||    
T  42342839 caatttttaaacgacccctaattgtaag---gatgaaatacatatttaagc 42342792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 46475159 - 46475205
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaa 300  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||    
T  46475159 tcaatttttaaacgacccctaattgtaag---gatgaaatacatatttaa 46475205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 9294338 - 9294385
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  9294338 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 9294385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 33689430 - 33689383
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  33689430 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 33689383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 33689759 - 33689806
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||    ||| |||||||||||||||||||    
T  33689759 caatttttaaacgacccctaattg---caaagatgaaatacatatttaagc 33689806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 40033836 - 40033883
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  40033836 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 40033883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 40758195 - 40758148
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  40758195 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 40758148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 41558056 - 41558009
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||| |||||| ||||   |||||||||||||||||||    
T  41558056 caatttttaaacgacccataattgcaaga---atgaaatacatatttaagc 41558009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 53756793 - 53756734
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagctaatttaaaaa 313  Q
    |||||||||||||||||||||||||    ||| ||||||||||||||||| | |||| |||||    
T  53756793 tcaatttttaaacgacccctaattg---caaagatgaaatacatatttaaacaaattaaaaaa 53756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 41098781 - 41098734
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||||||    
T  41098781 caatttttaaacgacccctaattgcaaga---atgaaatacatatttaagc 41098734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 183269 - 183222
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||||    || ||||||||||||||||    
T  183269 caatttttaaacgacccctaattgtaag---gatcaaatacatatttaagc 183222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 6367610 - 6367563
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  6367610 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 6367563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 17661900 - 17661853
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  17661900 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 17661853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 19515867 - 19515820
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  19515867 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 19515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 23209707 - 23209754
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  23209707 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 23209754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 24009623 - 24009576
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  24009623 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 24009576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 26024471 - 26024424
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| ||||   || ||||||||||||||||    
T  26024471 caatttttaaacgacccctaattgcaaga---atcaaatacatatttaagc 26024424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 30711707 - 30711754
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  30711707 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 30711754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 32917640 - 32917687
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||| |||||| ||||   |||||||||||||||||||    
T  32917640 caatttttaaacgacccttaattgcaaga---atgaaatacatatttaagc 32917687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 34464497 - 34464450
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  34464497 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 34464450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 35152711 - 35152758
Alignment:
Q  253 aatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagct 303  Q
    ||||||||||||||||||||||| |||    ||||||||||||||||||||    
T  35152711 aatttttaaacgacccctaattgcaag---gatgaaatacatatttaagct 35152758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 36694330 - 36694283
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  36694330 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 36694283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 36710431 - 36710384
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  36710431 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 36710384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0775 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 5011 - 4963
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||||| |    |||||||||||||||||||    
T  5011 tcaatttttaaacgacccctaattgtagg---gatgaaatacatatttaagc 4963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 302
Target Start/End: Complemental strand, 33357547 - 33357499
Alignment:
Q  251 tcaatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    ||||||||||||||||||||||||| |||    |||||||||||||||||||    
T  33357547 tcaatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 33357499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 16388631 - 16388584
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  16388631 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 16388584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 38956052 - 38956107
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagctaatttaa 310  Q
    |||||||||||||||||||||||| |||    || |||||||||||||||| |||||||    
T  38956052 caatttttaaacgacccctaattgcaag---gatcaaatacatatttaagccaatttaa 38956107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 39071724 - 39071677
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  39071724 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 39071677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 6459 - 6506
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  6459 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 6506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 3059636 - 3059683
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  3059636 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 3059683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 30726139 - 30726186
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  30726139 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 30726186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 33517914 - 33517961
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  33517914 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 33517961  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 33647331 - 33647378
Alignment:
Q  252 caatttttaaacgacccctaattgtaagaaatatgaaatacatatttaagc 302  Q
    |||||||||||||||||||||||| |||    |||||||||||||||||||    
T  33647331 caatttttaaacgacccctaattgcaag---gatgaaatacatatttaagc 33647378  T

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