View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_high_25 (Length: 244)

Name: NF11385_high_25
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_high_25
NF11385_high_25
[»] chr2 (13 HSPs)
chr2 (1-231)||(43585798-43586028)
chr2 (1-57)||(12224259-12224315)
chr2 (2-57)||(2438686-2438741)
chr2 (13-83)||(14450708-14450778)
chr2 (13-83)||(17895824-17895894)
chr2 (13-58)||(24009343-24009388)
chr2 (1-57)||(5040770-5040826)
chr2 (13-57)||(37419802-37419846)
chr2 (2-53)||(15972910-15972961)
chr2 (2-57)||(38117126-38117181)
chr2 (5-67)||(24067790-24067852)
chr2 (13-58)||(36096330-36096375)
chr2 (35-71)||(8300188-8300224)
[»] chr7 (10 HSPs)
chr7 (1-79)||(25956481-25956558)
chr7 (1-79)||(5937366-5937444)
chr7 (14-83)||(22801671-22801740)
chr7 (24-81)||(48963995-48964052)
chr7 (2-54)||(21864845-21864897)
chr7 (2-57)||(21880189-21880244)
chr7 (11-57)||(598254-598300)
chr7 (2-54)||(15680846-15680898)
chr7 (13-57)||(24339701-24339745)
chr7 (14-58)||(39138493-39138537)
[»] chr3 (13 HSPs)
chr3 (4-83)||(34834869-34834948)
chr3 (2-57)||(10954989-10955044)
chr3 (2-57)||(55401112-55401167)
chr3 (1-53)||(14338454-14338506)
chr3 (2-57)||(7171538-7171593)
chr3 (2-57)||(20503502-20503557)
chr3 (2-57)||(28918038-28918095)
chr3 (13-58)||(13845491-13845536)
chr3 (13-57)||(4987247-4987291)
chr3 (13-57)||(14832158-14832202)
chr3 (13-57)||(40993302-40993346)
chr3 (13-57)||(41961606-41961650)
chr3 (11-83)||(54690304-54690376)
[»] chr6 (17 HSPs)
chr6 (2-80)||(26402624-26402702)
chr6 (1-78)||(1334697-1334774)
chr6 (9-83)||(26178527-26178601)
chr6 (1-83)||(32225331-32225413)
chr6 (13-83)||(785385-785455)
chr6 (2-57)||(28152135-28152190)
chr6 (2-57)||(28715332-28715387)
chr6 (2-53)||(34595171-34595222)
chr6 (2-54)||(32978869-32978921)
chr6 (19-57)||(17327617-17327655)
chr6 (49-83)||(19369889-19369923)
chr6 (4-57)||(4877982-4878034)
chr6 (13-58)||(16488545-16488590)
chr6 (13-57)||(8365475-8365519)
chr6 (13-57)||(10339081-10339125)
chr6 (13-57)||(16766756-16766800)
chr6 (2-54)||(23771615-23771667)
[»] chr4 (15 HSPs)
chr4 (1-81)||(13307913-13307993)
chr4 (13-83)||(37496763-37496833)
chr4 (1-71)||(44362702-44362772)
chr4 (4-57)||(23292953-23293006)
chr4 (16-83)||(10635053-10635120)
chr4 (2-57)||(34306771-34306826)
chr4 (34-81)||(39619045-39619092)
chr4 (2-52)||(12797310-12797360)
chr4 (2-58)||(49431063-49431119)
chr4 (2-45)||(16073431-16073474)
chr4 (13-58)||(5414127-5414172)
chr4 (1-29)||(13117465-13117493)
chr4 (35-83)||(13484078-13484126)
chr4 (2-54)||(29205481-29205533)
chr4 (13-57)||(30982834-30982878)
[»] chr8 (6 HSPs)
chr8 (13-83)||(10497746-10497816)
chr8 (9-57)||(5813636-5813684)
chr8 (2-39)||(20873106-20873143)
chr8 (13-58)||(26915201-26915246)
chr8 (13-58)||(34450987-34451032)
chr8 (1-63)||(42874558-42874620)
[»] scaffold0053 (1 HSPs)
scaffold0053 (2-57)||(8835-8890)
[»] chr5 (10 HSPs)
chr5 (2-57)||(21576712-21576767)
chr5 (1-83)||(7621171-7621258)
chr5 (48-83)||(9031879-9031914)
chr5 (2-57)||(21191023-21191078)
chr5 (13-56)||(21542089-21542132)
chr5 (7-61)||(11084341-11084395)
chr5 (13-58)||(21814320-21814365)
chr5 (13-58)||(30099004-30099049)
chr5 (13-57)||(21522809-21522853)
chr5 (13-57)||(21533375-21533419)
[»] chr1 (9 HSPs)
chr1 (2-57)||(46348350-46348405)
chr1 (13-57)||(32461420-32461464)
chr1 (2-57)||(1815294-1815349)
chr1 (2-57)||(18337366-18337421)
chr1 (2-57)||(37598868-37598923)
chr1 (2-57)||(51410062-51410117)
chr1 (13-58)||(25934675-25934720)
chr1 (19-71)||(14613061-14613113)
chr1 (13-57)||(40917808-40917852)
[»] scaffold0314 (1 HSPs)
scaffold0314 (35-80)||(9016-9061)
[»] scaffold0504 (1 HSPs)
scaffold0504 (35-83)||(8643-8691)
[»] scaffold0652 (1 HSPs)
scaffold0652 (2-53)||(433-484)
[»] scaffold0083 (1 HSPs)
scaffold0083 (2-45)||(45509-45552)
[»] scaffold0512 (1 HSPs)
scaffold0512 (2-44)||(5016-5058)
[»] scaffold0122 (1 HSPs)
scaffold0122 (18-71)||(10260-10313)
[»] scaffold0450 (1 HSPs)
scaffold0450 (13-57)||(8591-8635)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-57)||(241653-241697)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 43586028 - 43585798
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacagaagtccttttagagaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  43586028 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagaggtccttttagagaaaa 43585929  T
Q  101 agttacatggtctgagggcaatagatctccattttattggggaggaacacaaatcacaaaagctacaaaacaacctcgatcaaatcaaaaatcactagcc 200  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43585928 agttacatggtctgagggcaatagatctccagtttattggcgaggaacacaaatcacaaaagctacaaaacaacctcaatcaaatcaaaaatcactagcc 43585829  T
Q  201 aaaggtacatggtctgagggcatgaagacat 231  Q
    |||||||||||||||||||||||||||||||    
T  43585828 aaaggtacatggtctgagggcatgaagacat 43585798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12224259 - 12224315
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12224259 atgtaattacaagtgtcggtgtcggacacgatacgtgtccgacactgggacacgcct 12224315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 2438741 - 2438686
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| || |||| ||||| |||||||||||    
T  2438741 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacgcct 2438686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 14450778 - 14450708
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||| |||||| |||| || | ||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  14450778 gtgttggtgtcagacaggacatgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacaga 14450708  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 17895894 - 17895824
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||| ||||||| ||||||||||||||||| |   ||||||||||||||||| |||||| | |||||||||    
T  17895894 gtgttggtgtcgaacacgatacgtgtcggatattaggacacgccttcaatcaaaagtgtccatgcaacaga 17895824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 24009343 - 24009388
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  24009343 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgcctt 24009388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5040770 - 5040826
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||| ||||||||||||||||||||||| | ||||| ||| | |||||||||||    
T  5040770 atgtaattacaagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcct 5040826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 37419802 - 37419846
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcct 37419846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 15972910 - 15972961
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacac 53  Q
    |||||| ||||||||||||||||||||||| ||||||| ||| | |||||||    
T  15972910 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacac 15972961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 38117181 - 38117126
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| |||||||| |||||||||||| | ||||||| ||||| |||||||||||    
T  38117181 tgtaattacaagtgttggtgtcggacacaacacgtgtccgacaccgggacacgcct 38117126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 24067790 - 24067852
Alignment:
Q  5 aatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaa 67  Q
    ||||||||||||||||||| ||||||| ||||||| ||||  | |||| | ||||||||||||    
T  24067790 aatcacaagtgtcggtgtcagacacgacacgtgtcagacattgagacatgacttcaatcagaa 24067852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 36096375 - 36096330
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    |||||| |||||||||||| ||||||| ||||| ||||||||||||    
T  36096375 gtgtcgatgtcggacacgacacgtgtctgacacggggacacgcctt 36096330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 8300224 - 8300188
Alignment:
Q  35 gtgtcggacacagggacacgccttcaatcagaagtgt 71  Q
    |||| |||||| |||||||||||||||||||||||||    
T  8300224 gtgttggacaccgggacacgccttcaatcagaagtgt 8300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 25956481 - 25956558
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaa 79  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  25956481 atgtaatcacaagtgtcggtgtcggacacgatacatgtcggacac-gggacacgccttcaatcagaagtgtccgtgcaa 25956558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5937444 - 5937366
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaa 79  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||  | | |||||||||||  ||||||| |||||||    
T  5937444 atgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtccgtgcaa 5937366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 22801740 - 22801671
Alignment:
Q  14 tgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||| ||||| ||||| | || |||||||||| |||||||||||||||||||||||| | ||||||||||    
T  22801740 tgtcagtgtctgacaccacacttgtcggacactgggacacgccttcaatcagaagtgctggtgcaacaga 22801671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 48964052 - 48963995
Alignment:
Q  24 ggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaaca 81  Q
    ||||||||||||||||| |||| ||||||  ||||||||||||||||| | |||||||    
T  48964052 ggacacgatacgtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 21864845 - 21864897
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacg 54  Q
    |||||| |||||||||| |||||||||||| ||||||| ||||| ||||||||    
T  21864845 tgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacacg 21864897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 21880189 - 21880244
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| || |||| |||||  ||||||||||    
T  21880189 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcct 21880244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 598254 - 598300
Alignment:
Q  11 aagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||| ||||||| ||||||| ||||| |||||||||||    
T  598254 aagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 598300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 15680846 - 15680898
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacg 54  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||| | ||||||    
T  15680846 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccgagacacg 15680898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 24339701 - 24339745
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| |||| || ||||| |||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcct 24339745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 39138493 - 39138537
Alignment:
Q  14 tgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||||| ||||  |||| ||||||||||||    
T  39138493 tgtcggtgtcggacacgatacatgtctaacacggggacacgcctt 39138537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 34834948 - 34834869
Alignment:
Q  4 taatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||||| ||| ||||||||||||  ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  34834948 taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 10954989 - 10955044
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  10954989 tgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacactgggacacgcct 10955044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 55401112 - 55401167
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| | |||||||||    
T  55401112 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 55401167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14338506 - 14338454
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacac 53  Q
    |||||||||||| |||||||||| ||||||| |||| |||||||| |||||||    
T  14338506 atgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 7171538 - 7171593
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| |||||||| |||||||||||||| ||||||| ||||| | |||||||||    
T  7171538 tgtaattacaagtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcct 7171593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 20503502 - 20503557
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| |||||||||||||| |||||||| || |||| ||||| |||||||||||    
T  20503502 tgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacacgcct 20503557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 28918038 - 28918095
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcg--gacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||  ||||||| ||||||| ||||| |||||||||||    
T  28918038 tgtaattacaagtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcct 28918095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 13845536 - 13845491
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  13845536 gtgtcggtgtcggacacgagacgtgtctgacacggagacacgcctt 13845491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4987291 - 4987247
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||||| |||||||| ||||||| ||||| |||||||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcct 4987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 14832158 - 14832202
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||| |||||||||| ||||||| ||||| |||||||||||    
T  14832158 gtgtcggtatcggacacgacacgtgtccgacaccgggacacgcct 14832202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 40993346 - 40993302
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| || |||| ||||| |||||||||||    
T  40993346 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcct 40993302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 41961650 - 41961606
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||| |||||||||| ||||||| ||||| |||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcct 41961606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 54690376 - 54690304
Alignment:
Q  11 aagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||||||||||||||||| | || ||| | |||| ||||| ||||||| |||| |||| || ||||||||||    
T  54690376 aagtgtcggtgtcggacacaacacatgttgcacactgggacgcgccttcgatcaaaagttttggtgcaacaga 54690304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 26402702 - 26402624
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaac 80  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| | |||||  |||||||||||||||| ||||||||    
T  26402702 tgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1334697 - 1334774
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgca 78  Q
    |||||||||||| ||||||||||| ||||||| ||||||| ||||  |||||| ||||||||||||||||| ||||||    
T  1334697 atgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 26178527 - 26178601
Alignment:
Q  9 acaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||| |||||||||||||||| ||||||||||||  ||||||  ||||||||||||||||| |||||| ||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcaga 26178601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32225413 - 32225331
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||  |||||| ||||||||||| |||||| ||||| ||||    
T  32225413 atgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtgtttgtgcagcaga 32225331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 785455 - 785385
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||||||||| ||| |||  |||||||||||  |||||| ||||||||||||||||| |||||||||||    
T  785455 gtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacaga 785385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 28152135 - 28152190
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| |||||| ||||    
T  28152135 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcct 28152190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 28715332 - 28715387
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||  ||||| |||||||||||    
T  28715332 tgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcct 28715387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 34595171 - 34595222
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacac 53  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| |||||||    
T  34595171 tgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacac 34595222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 32978921 - 32978869
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacg 54  Q
    |||||| ||||||||||||||||||||||| || |||| ||||| ||||||||    
T  32978921 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacacg 32978869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 17327655 - 17327617
Alignment:
Q  19 gtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||| ||||||| |||||||||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcct 17327617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 19369889 - 19369923
Alignment:
Q  49 gacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||||||||||||||||||||| |||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacaga 19369923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 4877982 - 4878034
Alignment:
Q  4 taatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||| ||||||||||||||||||||||| || |||| |||||| ||||||||||    
T  4877982 taattacaagtgtcggtgtcggacacgacacatgtccgacaca-ggacacgcct 4878034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 16488590 - 16488545
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  16488590 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgcctt 16488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8365519 - 8365475
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||| |||||||||| ||||||| ||||| |||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcct 8365475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 10339125 - 10339081
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| || |||| ||||| |||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcct 10339081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 16766756 - 16766800
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||| | ||||||| ||||| |||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcct 16766800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 23771615 - 23771667
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacg 54  Q
    |||||| |||| |||||||||||||||||| | ||||| ||||||| ||||||    
T  23771615 tgtaattacaaatgtcggtgtcggacacgacatgtgtccgacacagagacacg 23771667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 13307913 - 13307993
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaaca 81  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||   |||| ||||||||||||||||||| ||||||||    
T  13307913 atgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 37496763 - 37496833
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||| || ||||||||| || |||||||||| |||||||||||||||||| |||||| |||||||||||    
T  37496763 gtgtcgttgccggacacgacacatgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacaga 37496833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44362702 - 44362772
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgt 71  Q
    |||||||||||||||| |||||| ||||||| |||| |||||||  ||||||| |||| ||||||||||||    
T  44362702 atgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgt 44362772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23293006 - 23292953
Alignment:
Q  4 taatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  23293006 taattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcct 23292953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 10635053 - 10635120
Alignment:
Q  16 tcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||||| |||| ||||||||||||||||  |||||   ||||||||||||| ||||||||||||||    
T  10635053 tcggtgtcagacatgatacgtgtcggacacccggacaactcttcaatcagaagagttcgtgcaacaga 10635120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 34306826 - 34306771
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| | |||||||||    
T  34306826 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 34306771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 39619092 - 39619045
Alignment:
Q  34 cgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaaca 81  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  39619092 cgtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 12797360 - 12797310
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggaca 52  Q
    |||||| |||||||||||||||||||||||||| |||| ||||| ||||||    
T  12797360 tgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggaca 12797310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 49431063 - 49431119
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    |||||| | ||||||||||||||||||||| |||||||  |||| ||||||||||||    
T  49431063 tgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgcctt 49431119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16073431 - 16073474
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacac 45  Q
    |||||| |||||||||||||||||||||||||| |||| |||||    
T  16073431 tgtaattacaagtgtcggtgtcggacacgatacatgtccgacac 16073474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 5414172 - 5414127
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||| ||||||||||||| ||||||| ||||||||||||| ||||    
T  5414172 gtgtcagtgtcggacacgacacgtgtctgacacagggacacacctt 5414127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13117465 - 13117493
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacac 29  Q
    |||||||||||||||||||||||||||||    
T  13117465 atgtaatcacaagtgtcggtgtcggacac 13117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 13484078 - 13484126
Alignment:
Q  35 gtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||||||||| || ||| || |||||||||||||||| ||||||||||    
T  13484078 gtgtcggacactggaacatgcattcaatcagaagtgttggtgcaacaga 13484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 29205481 - 29205533
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacg 54  Q
    |||||| |||||||||||||| |||||||| || |||| ||||| ||||||||    
T  29205481 tgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacacg 29205533  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 30982878 - 30982834
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||| ||||||| ||||||| ||||| |||||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 10497816 - 10497746
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||||||||| |||  |||| ||||  |||| |||||||||||||||||||| ||||||||||||||||    
T  10497816 gtgtcggtgtcgaacataatacatgtcaaacaccgggacacgccttcaatcagaggtgttcgtgcaacaga 10497746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 5813636 - 5813684
Alignment:
Q  9 acaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  5813636 acaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcct 5813684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 20873106 - 20873143
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtc 39  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20873106 tgtaattacaagtgtcggtgtcggacacgatacgtgtc 20873143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 26915246 - 26915201
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||    
T  26915246 gtgtcggtgtcggacacgatacgtgtcagacattgggacacgcctt 26915201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 34451032 - 34450987
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgcctt 34450987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42874558 - 42874620
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaatc 63  Q
    ||||||||||||||||| |||| |||||| | || |||||||||  | |||||||||||||||    
T  42874558 atgtaatcacaagtgtcagtgttggacacaacacatgtcggacatcgagacacgccttcaatc 42874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 8835 - 8890
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| | |||||||||    
T  8835 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 8890  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21576767 - 21576712
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| |||||||||| |||||||||||| ||||||| ||||| |||||||||||    
T  21576767 tgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcct 21576712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7621258 - 7621171
Alignment:
Q  1 atgtaatcacaagtgtcggtgtcg-----gacacgatacgtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||||||||||| ||||||||      |||||||||| | |||||||   ||||||| |||||||||||||||| |||||||||||    
T  7621258 atgtaatcacaagtatcggtgtcatatcagacacgatacttatcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacaga 7621171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 9031914 - 9031879
Alignment:
Q  48 ggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    |||||||||||||||||||||||| |||||||||||    
T  9031914 ggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21191078 - 21191023
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||| | ||||||| ||| | |||||||||||    
T  21191078 tgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacacgcct 21191023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 21542089 - 21542132
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcc 56  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcc 21542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 11084341 - 11084395
Alignment:
Q  7 tcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgccttcaa 61  Q
    |||| ||||||||||| |||||||| || ||||| |||| |||||||||||||||    
T  11084341 tcactagtgtcggtgttggacacgacacatgtcgaacaccgggacacgccttcaa 11084395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 21814320 - 21814365
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  21814320 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgcctt 21814365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 30099049 - 30099004
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    |||||||||||||| |||| ||||||| ||||| ||||||||||||    
T  30099049 gtgtcggtgtcggatacgacacgtgtctgacacggggacacgcctt 30099004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21522809 - 21522853
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcct 21522853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21533375 - 21533419
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| ||||||| | ||| |||||||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcct 21533419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 46348405 - 46348350
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||| | |||||||||    
T  46348405 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcct 46348350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 32461464 - 32461420
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||    
T  32461464 gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcct 32461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 1815294 - 1815349
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||| ||||||| || |||| ||||| |||||||||||    
T  1815294 tgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacacgcct 1815349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 18337366 - 18337421
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||| | ||||||| ||||| |||||| ||||    
T  18337366 tgtaattacaagtgtcggtgtcggacacaacacgtgtccgacactgggacatgcct 18337421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 37598868 - 37598923
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| | ||||||||||||||||||||| ||||||| ||||  |||||||||||    
T  37598868 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcct 37598923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 51410062 - 51410117
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||| ||||||||||||||||||||||| |||| || ||||| | |||||||||    
T  51410062 tgtaattacaagtgtcggtgtcggacacgacacgtatccgacaccgagacacgcct 51410117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 25934675 - 25934720
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcctt 58  Q
    ||||||||||||||||||| ||||||| ||||| |||| |||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgcctt 25934720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 14613113 - 14613061
Alignment:
Q  19 gtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgt 71  Q
    ||||||||||||| |  ||||||| || | |||||||||||||||||||||||    
T  14613113 gtgtcggacacgacatatgtcggatacggagacacgccttcaatcagaagtgt 14613061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 40917808 - 40917852
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||||| |||||||| ||||||| ||||| |||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcct 40917852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 9016 - 9061
Alignment:
Q  35 gtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaac 80  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||    
T  9016 gtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaac 9061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 8691 - 8643
Alignment:
Q  35 gtgtcggacacagggacacgccttcaatcagaagtgttcgtgcaacaga 83  Q
    ||||| ||||| |||||| |||||||||||||||||| |||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacaga 8643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 484 - 433
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacacagggacac 53  Q
    |||||| |||||||||||||||||||||||  |||||| ||||| |||||||    
T  484 tgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacac 433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 45552 - 45509
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggacac 45  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||    
T  45552 tgtaattacaagtgtcggtgtcggacacgacacgtgtctgacac 45509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 5058 - 5016
Alignment:
Q  2 tgtaatcacaagtgtcggtgtcggacacgatacgtgtcggaca 44  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgaca 5016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 10313 - 10260
Alignment:
Q  18 ggtgtcggacacgatacgtgtcggacacagggacacgccttcaatcagaagtgt 71  Q
    |||||||||| |||| |||||||||||   |||||| |||||||||||||||||    
T  10313 ggtgtcggacgcgatgcgtgtcggacagcaggacacaccttcaatcagaagtgt 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 8635 - 8591
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||||||| |||||||||||||||||| ||||| || ||||||||    
T  8635 gtgtcggtatcggacacgatacgtgtccgacactggtacacgcct 8591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 241653 - 241697
Alignment:
Q  13 gtgtcggtgtcggacacgatacgtgtcggacacagggacacgcct 57  Q
    |||| |||||||||||||| ||||||| ||||| |||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcct 241697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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