View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_high_26 (Length: 242)
Name: NF11385_high_26
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2323061 - 2323289
Alignment:
| Q |
1 |
ttgaaatttagatgtgagtcactgagtgcctctcacactacacacaatccaaatcgaagtttgatttagataccctatacacctcactttgtgtagtctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2323061 |
ttgaaatttagatgtgagtcactgagtgcctctcacactacacacaatccaaatcgaagtttgatttagataccctatacacctcactttgtgtagtctc |
2323160 |
T |
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| Q |
101 |
aatactacttttgcttgaactatatcctcaatttcttaggagtttgatatcgctcttcatttggctttgacagagct---aagtttttcatggactacat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2323161 |
aatactacttttgcttgaactatatcctcaatttcttaggagtttgatatcgctcttcatttggctttgacagagctaagaagtttttcatggactacat |
2323260 |
T |
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| Q |
198 |
ggcaaccattagtctgacatgcttgttgg |
226 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2323261 |
ggcaaccattagtctgacatgcttgttgg |
2323289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2298837 - 2299070
Alignment:
| Q |
1 |
ttgaaatttagatgtgagtcactgagtgcctctcacactacacacaatccaaatcgaagtttgatttagataccctatacacctcactttgtgtagtctc |
100 |
Q |
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||||||||||||||||| ||| || |||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| ||| |
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| T |
2298837 |
ttgaaatttagatgtgactcattgcgtgcag-tcacactacacacaatccaaatcggagttt----tagataccctatatacctcactctgtgtaggctc |
2298931 |
T |
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| Q |
101 |
aatactacttttgcttgaactatatcct-caat--------ttcttaggagtttgatatcgctcttcatttggctttgacagagctaag---tttttcat |
188 |
Q |
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|||| ||||||||||||||| ||||||| |||| | | | |||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
2298932 |
aatattacttttgcttgaacaatatcctacaatacaatgaatcgtcatgagtttgacatcgctcttcatttggctttgacagagctaagaaatttttcat |
2299031 |
T |
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| Q |
189 |
ggactacatggcaaccattagtctga-catgcttgttgg |
226 |
Q |
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||||||||||||| |||||||||| | |||||||||||| |
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| T |
2299032 |
ggactacatggcagccattagtctcaccatgcttgttgg |
2299070 |
T |
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