View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_high_28 (Length: 222)

Name: NF11385_high_28
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_high_28
NF11385_high_28
[»] chr8 (4 HSPs)
chr8 (1-114)||(2322565-2322679)
chr8 (77-114)||(33359785-33359822)
chr8 (1-37)||(2298577-2298613)
chr8 (43-108)||(39821877-39821943)
[»] chr3 (8 HSPs)
chr3 (44-92)||(38699069-38699118)
chr3 (53-111)||(7626460-7626518)
chr3 (54-108)||(33745104-33745158)
chr3 (43-105)||(30229531-30229594)
chr3 (77-114)||(8238592-8238629)
chr3 (77-114)||(32843258-32843295)
chr3 (79-108)||(43399164-43399193)
chr3 (44-108)||(53162192-53162257)
[»] chr2 (9 HSPs)
chr2 (36-114)||(10735827-10735906)
chr2 (43-114)||(26999103-26999175)
chr2 (54-114)||(36474767-36474827)
chr2 (53-100)||(7302151-7302198)
chr2 (44-114)||(24592842-24592913)
chr2 (53-112)||(25561995-25562054)
chr2 (42-107)||(27244649-27244715)
chr2 (77-114)||(41859880-41859917)
chr2 (54-114)||(29544632-29544692)
[»] chr5 (8 HSPs)
chr5 (44-112)||(17210707-17210776)
chr5 (43-107)||(32559297-32559362)
chr5 (43-114)||(6489000-6489072)
chr5 (44-114)||(40715945-40716016)
chr5 (54-108)||(9893673-9893727)
chr5 (44-112)||(42613202-42613271)
chr5 (54-114)||(979821-979881)
chr5 (44-100)||(12611045-12611101)
[»] chr1 (4 HSPs)
chr1 (43-114)||(16033446-16033518)
chr1 (41-114)||(41763151-41763225)
chr1 (77-107)||(52267792-52267822)
chr1 (82-114)||(39452494-39452526)
[»] chr6 (4 HSPs)
chr6 (77-108)||(9367429-9367460)
chr6 (54-108)||(14945515-14945569)
chr6 (44-108)||(331888-331953)
chr6 (77-114)||(27907947-27907984)
[»] chr4 (5 HSPs)
chr4 (43-97)||(56564996-56565051)
chr4 (53-107)||(48226501-48226555)
chr4 (77-114)||(16431644-16431681)
chr4 (43-95)||(16584964-16585017)
chr4 (77-114)||(48226720-48226757)
[»] scaffold0168 (1 HSPs)
scaffold0168 (77-107)||(9431-9461)
[»] chr7 (4 HSPs)
chr7 (54-108)||(5579698-5579752)
chr7 (44-108)||(43139259-43139324)
chr7 (43-114)||(19416507-19416579)
chr7 (80-108)||(20576412-20576440)
[»] scaffold0016 (1 HSPs)
scaffold0016 (59-112)||(99047-99100)
[»] scaffold0458 (1 HSPs)
scaffold0458 (82-114)||(11147-11179)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 2322679 - 2322565
Alignment:
Q  1 tattcaataaacaaataaaatcatttcaaatagcgtagattatgtcctcgtgactt-agctcaattgatagagacggtgcataaaatatgcaaggtctgg 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |     
T  2322679 tattcaataaacaaattaaatcatttcaaatagcgtagattatgtcctcgtgacttaagctcaattgatagagacggtgcataacatatgcaaggtccga 2322580  T
Q  100 gattcaaactccggc 114  Q
    |||||||||||||||    
T  2322579 gattcaaactccggc 2322565  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 33359822 - 33359785
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  33359822 tgcataaaatatgtaaggtctgggattcaaactccggc 33359785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2298613 - 2298577
Alignment:
Q  1 tattcaataaacaaataaaatcatttcaaatagcgta 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2298613 tattcaataaacaaataaaatcatttcaaataacgta 2298577  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 39821877 - 39821943
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||||| ||||||||| ||| ||| |||  ||||||| |||||||||||||||| |||||||    
T  39821877 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaac 39821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 38699069 - 38699118
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaa 92  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  38699069 gtcctcgtgagcttagctcaattgatagagacgatgcataaaatatgcaa 38699118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 7626518 - 7626460
Alignment:
Q  53 acttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactcc 111  Q
    ||||| |||||||||| |||||  |||||||||||||||||||| ||| ||||||||||    
T  7626518 acttaactcaattgattgagacaatgcataaaatatgcaaggtccggggttcaaactcc 7626460  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 33745104 - 33745158
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||||||||||  |||  |||||||||||||||||||||||| |||||||    
T  33745104 cttagctcaattgatatggacaatgcataaaatatgcaaggtctggggttcaaac 33745158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 30229594 - 30229531
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattca 105  Q
    ||||||||||| ||||||||||||| ||  |||  |||||||||||||||||||| ||||||||    
T  30229594 tgtcctcgtgagcttagctcaattggtattgacaatgcataaaatatgcaaggtccgggattca 30229531  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 8238592 - 8238629
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  8238592 tgcataatatatgcaaggtctggggttcaaactccggc 8238629  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 32843295 - 32843258
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  32843295 tgcataaaatatgcaaggtctggggttcaaaccccggc 32843258  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 43399193 - 43399164
Alignment:
Q  79 cataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||||||||||||||||||||||||    
T  43399193 cataaaatatgcaaggtctgggattcaaac 43399164  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 53162192 - 53162257
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    |||||||||| ||||||||||||||||  |||  ||||||||||||||||||| || | |||||||    
T  53162192 gtcctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtttgaggttcaaac 53162257  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 10735906 - 10735827
Alignment:
Q  36 tagattatgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||| |||||||||| ||||||||| ||| ||| |||| ||||||| |||||||||||| ||| ||||||| |||||    
T  10735906 tagattaagtcctcgtgagcttagctcagttggtagggacgatgcataatatatgcaaggtccggggttcaaaccccggc 10735827  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 26999103 - 26999175
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||| ||||| ||| ||| |||||||  ||||||| |||||||||||||| | |||||||||||||    
T  26999103 tgtcctcgtgaacttagttcagttggtagagacaatgcataatatatgcaaggtctgcggttcaaactccggc 26999175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 36474767 - 36474827
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||| ||||||| |||  |||||||||||||||||||| ||| |||||| ||||||    
T  36474767 cttagctcagttgatagggacaatgcataaaatatgcaaggtccggggttcaaattccggc 36474827  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 7302198 - 7302151
Alignment:
Q  53 acttagctcaattgatagagacggtgcataaaatatgcaaggtctggg 100  Q
    |||||||||| ||||||| |||  ||||||||||||||||||||||||    
T  7302198 acttagctcagttgatagggacaatgcataaaatatgcaaggtctggg 7302151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 24592913 - 24592842
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||| ||||||||| ||| ||| |||  ||||||| |||||||||||||||| ||||||| |||||    
T  24592913 gtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggc 24592842  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 25562054 - 25561995
Alignment:
Q  53 acttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccg 112  Q
    |||||||||| ||| ||  ||| |||||||||||||||||| |||||| |||||||||||    
T  25562054 acttagctcagttggtaaggacagtgcataaaatatgcaagatctggggttcaaactccg 25561995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 27244649 - 27244715
Alignment:
Q  42 atgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaa 107  Q
    |||||||||||| ||||||||| ||||||| |||  ||||||| ||||||||||||| || ||||||    
T  27244649 atgtcctcgtgagcttagctcagttgatagggacaatgcataatatatgcaaggtctagggttcaaa 27244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 41859880 - 41859917
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  41859880 tgcataaaatatgcaaggtctggggttcaaaccccggc 41859917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 29544632 - 29544692
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||||| ||| |||  ||||||| |||||||||||| ||| ||||||| |||||    
T  29544632 cttagctcaattggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggc 29544692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 17210776 - 17210707
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccg 112  Q
    |||||||||| ||||||||| ||| ||| ||| |||||||| ||||||||||| |||| |||||||||||    
T  17210776 gtcctcgtgagcttagctcagttggtagggacagtgcataatatatgcaaggtgtggggttcaaactccg 17210707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 32559297 - 32559362
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaa 107  Q
    ||||||||||| ||||||||||||||||  |||  ||||||||||||| |||||||||| ||||||    
T  32559297 tgtcctcgtgagcttagctcaattgatattgacaatgcataaaatatgtaaggtctggggttcaaa 32559362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 6489000 - 6489072
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||| ||||||||| ||| ||| |||  ||||||| |||||||||||||||| ||||||| |||||    
T  6489000 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggc 6489072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 40716016 - 40715945
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||| ||||||||||||||||  |||  ||||||| |||||||||||| ||| ||||||| |||||    
T  40716016 gtcctcgtgagcttagctcaattgatatggacaatgcataatatatgcaaggtccggggttcaaaccccggc 40715945  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 9893727 - 9893673
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||| |||||| |||   |||||||||||||||||||||||| |||||||    
T  9893727 cttagctcagttgatatagataatgcataaaatatgcaaggtctggggttcaaac 9893673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 42613271 - 42613202
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccg 112  Q
    |||||||||| ||||| |||||||||   |||  |||||||||||||||||||||||| |||||| ||||    
T  42613271 gtcctcgtgagcttagttcaattgatttggacaatgcataaaatatgcaaggtctggggttcaaattccg 42613202  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 979881 - 979821
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||| |||| |||||||||||| ||||||| |||||||| |||| || ||||||| |||||    
T  979881 cttatctcagttgatagagacgatgcataatatatgcaacgtctagggttcaaaccccggc 979821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 12611101 - 12611045
Alignment:
Q  44 gtcctcgtgacttagctcaattgatagagacggtgcataaaatatgcaaggtctggg 100  Q
    |||||||||| || ||||||||| ||  |||  ||||||||||||||||||||||||    
T  12611101 gtcctcgtgagtttgctcaattggtatggacaatgcataaaatatgcaaggtctggg 12611045  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 16033518 - 16033446
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||| |||  |||| ||||||| |||  ||||||| |||||||||||||||| |||||||||||||    
T  16033518 tgtcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggc 16033446  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 41763225 - 41763151
Alignment:
Q  41 tatgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||||| ||||||||| ||| ||| ||   |||||||||||||||||||| ||| ||||||| |||||    
T  41763225 tatgtcctcgtgagcttagctcagttggtagggataatgcataaaatatgcaaggtccggggttcaaaccccggc 41763151  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 52267792 - 52267822
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaa 107  Q
    |||||||||||||||||||||||||||||||    
T  52267792 tgcataaaatatgcaaggtctgggattcaaa 52267822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 39452494 - 39452526
Alignment:
Q  82 aaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||||||||||||||||||| |||||    
T  39452494 aaaatatgcaaggtctgggattcaaaccccggc 39452526  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 108
Target Start/End: Original strand, 9367429 - 9367460
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||||||||||||||||||||||||||    
T  9367429 tgcataaaatatgcaaggtctgggattcaaac 9367460  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 14945569 - 14945515
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||| ||||||||||| |||||||| ||||| |||||  |||||||||||    
T  14945569 cttagctcagttgatagagacagtgcataatatatgtaaggttcgggattcaaac 14945515  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 331953 - 331888
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    |||||||||| |||| |||| ||| |||||||  ||||||| ||||||||||| ||||||||||||    
T  331953 gtcctcgtgagcttaactcagttggtagagacaatgcataatatatgcaaggtttgggattcaaac 331888  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 27907984 - 27907947
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  27907984 tgcataaaatatgcaaggtctggggttcaaaccccggc 27907947  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 56565051 - 56564996
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtct 97  Q
    ||||||||||| ||||||||||||||||  |||  |||||||||||||||||||||    
T  56565051 tgtcctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtct 56564996  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 48226555 - 48226501
Alignment:
Q  53 acttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaa 107  Q
    |||||||||||||| ||  |||  |||||||||||||||||||||||| ||||||    
T  48226555 acttagctcaattggtatggacaatgcataaaatatgcaaggtctggggttcaaa 48226501  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 16431644 - 16431681
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  16431644 tgcataaaatatgcaaggtctggggttcaaaccccggc 16431681  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 16585017 - 16584964
Alignment:
Q  43 tgtcctcgtg-acttagctcaattgatagagacggtgcataaaatatgcaaggt 95  Q
    |||||||||| |||||||||||||||||  |||  |||||||||||||||||||    
T  16585017 tgtcctcgtggacttagctcaattgatatggacaatgcataaaatatgcaaggt 16584964  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 48226720 - 48226757
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  48226720 tgcataaaatatgcaaggtccggggttcaaactccggc 48226757  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 9431 - 9461
Alignment:
Q  77 tgcataaaatatgcaaggtctgggattcaaa 107  Q
    |||||||||||||||||||||||||||||||    
T  9431 tgcataaaatatgcaaggtctgggattcaaa 9461  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 5579698 - 5579752
Alignment:
Q  54 cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    ||||||||| ||| ||| ||| |||||||| |||||||||||||||| |||||||    
T  5579698 cttagctcagttggtagggacagtgcataatatatgcaaggtctggggttcaaac 5579752  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 43139259 - 43139324
Alignment:
Q  44 gtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaac 108  Q
    |||||||||| ||||||||| ||||| |||||  |||||||||||||||||||  ||| |||||||    
T  43139259 gtcctcgtgagcttagctcacttgattgagactatgcataaaatatgcaaggtacggggttcaaac 43139324  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 19416507 - 19416579
Alignment:
Q  43 tgtcctcgtga-cttagctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||| ||||||||| ||| ||  |||  |||||||||||||||||||| ||| ||||||| |||||    
T  19416507 tgtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttcaaaccccggc 19416579  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 20576440 - 20576412
Alignment:
Q  80 ataaaatatgcaaggtctgggattcaaac 108  Q
    |||||||||||||||||||||||||||||    
T  20576440 ataaaatatgcaaggtctgggattcaaac 20576412  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 99047 - 99100
Alignment:
Q  59 ctcaattgatagagacggtgcataaaatatgcaaggtctgggattcaaactccg 112  Q
    |||| ||||||| |||  ||||||| |||||||||||||||| |||||||||||    
T  99047 ctcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccg 99100  T

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Target: scaffold0458 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 114
Target Start/End: Complemental strand, 11179 - 11147
Alignment:
Q  82 aaaatatgcaaggtctgggattcaaactccggc 114  Q
    ||||||||||||||||||||||||||| |||||    
T  11179 aaaatatgcaaggtctgggattcaaaccccggc 11147  T

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