View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_high_7 (Length: 404)

Name: NF11385_high_7
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_high_7
NF11385_high_7
[»] chr6 (1 HSPs)
chr6 (19-389)||(31059996-31060365)
[»] chr5 (4 HSPs)
chr5 (19-229)||(20810671-20810880)
chr5 (19-229)||(20837026-20837235)
chr5 (336-375)||(20811175-20811214)
chr5 (336-375)||(20837530-20837569)
[»] chr8 (3 HSPs)
chr8 (66-229)||(31174462-31174624)
chr8 (19-229)||(3399924-3400133)
chr8 (19-229)||(3326287-3326496)
[»] chr7 (1 HSPs)
chr7 (19-229)||(8373034-8373243)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Complemental strand, 31060365 - 31059996
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31060365 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcagcaggaatc 31060266  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  31060265 gagaatcagcttcgatggtttagaagattatatgttaaaggatatatttttt-gacatatgttgtttcttcattggaaagaacagagctgatgttacaga 31060167  T
Q  219 gatacttaatgttttgtcaaaaattactgtaagaatttttgtgcgtcctctgtaatcttatcaggctcataagactcctcgtttgtttctagactacttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31060166 gatacttaatgttttgtcaaaaattactgtaagaatttttgtgcgtcctctgtaatcttatcaggctcataagactcctcgtttgtttctagactacttt 31060067  T
Q  319 ttctctccataattgacggctgaaattatttggatgcatgatttgtattctcatgttcgttataaacgtgc 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31060066 ttctctccataattgacggctgaaattatttggatgcatgatttgtattctcatgttcgttataaacgtgc 31059996  T

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Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 20810671 - 20810880
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    ||||||||||  |||||||||||||||||||  |||||||   |||  |||||||||  ||||||||||||||||||||   | | |||||||||  ||     
T  20810671 aagtccttggacgttacttatctgagaggacggaacaagaatggagatgtgcactatcaaaattagagaaaattcccaacaatgatgtgcaacagatatt 20810770  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||||||||  |||||||||||||||||||||  |||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  20810771 gagaatcagctatgatggtttagaagattatacgcaaaaggacatatttctt-gacatatgttgtttcttcattggaaagaacagagctgatgttacaga 20810869  T
Q  219 gatacttaatg 229  Q
    |||||||||||    
T  20810870 gatacttaatg 20810880  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 20837026 - 20837235
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    |||||||||| ||||||||||||||||||||  || ||||   |||   |||||||   | ||||||||||||||||||   | | |||||||||  ||     
T  20837026 aagtccttggatgttacttatctgagaggacggaaaaagaatggagagatgcactacaaatattagagaaaattcccaacaatgatgtgcaacagatatt 20837125  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||||||||  |||||||||||||||||||||  | |||| |||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  20837126 gagaatcagctatgatggtttagaagattatacgaaacaggacatatttctt-gacatatgttgtttcttcattggaaagaacagagctgatgttacaga 20837224  T
Q  219 gatacttaatg 229  Q
    |||||||||||    
T  20837225 gatacttaatg 20837235  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 20811175 - 20811214
Alignment:
Q  336 ggctgaaattatttggatgcatgatttgtattctcatgtt 375  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  20811175 ggctgaaattatttggatgcatgattttcattctcatgtt 20811214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 375
Target Start/End: Original strand, 20837530 - 20837569
Alignment:
Q  336 ggctgaaattatttggatgcatgatttgtattctcatgtt 375  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  20837530 ggctgaaattatttggatgcatgattttcattctcatgtt 20837569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 31174462 - 31174624
Alignment:
Q  66 agtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatcgagaatcagcttcgatggtttagaagattatacgttaaaggatatan 165  Q
    ||||||||||  ||||||||||||||||||||   ||||||||||||| ||  ||||||||||| ||| || ||||||||||||||   ||||||||||     
T  31174462 agtgcactatcaaaattagagaaaattcccaacaatcaagtgcaacagaaactgagaatcagctacgacggcttagaagattatactgaaaaggatatat 31174561  T
Q  166 nnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatg 229  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31174562 ttctt-gacatatgttgtttcttcattggaaagaacagagctgatgttacagagatacttaatg 31174624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 3400133 - 3399924
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    ||||||||||  ||||||||||  |||||||||  | |||   ||| ||||||||||  ||||||||||||||||||||   | |||||||||||  ||     
T  3400133 aagtccttggaagttacttatcaaagaggacaacccgagaatggagaagtgcactatcaaaattagagaaaattcccaacaatgaagtgcaacagatatt 3400034  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||||||||  ||||||||| ||||||||||   |||||| |||       ||||||||||||||||| |||||||||||||||||||||||||||||    
T  3400033 gagaatcagctatgatggtttacaagattatacacaaaaggacatatttctt-gacatatgttgtttcttgattggaaagaacagagctgatgttacaga 3399935  T
Q  219 gatacttaatg 229  Q
    |||||||||||    
T  3399934 gatacttaatg 3399924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 3326496 - 3326287
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    ||||||||||||  ||||||| ||||||||||||||||||   ||  |||| ||| ||||||||||||| ||||||||| | |||||||||| || ||      
T  3326496 aagtccttggttcatacttatatgagaggacaaaacaagaatggataagtgtactcttgaaattagagagaattcccaatgatcaagtgcaagagaaact 3326397  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||| |||| |||||||||| | ||| ||| |  ||| ||||||       ||||||||||||||||| || || ||| | ||||| || ||||||||    
T  3326396 gagaattagctacgatggtttaaaggatgatatggaaaaagatata-tttcttgacatatgttgtttctttataggcaaggatagagccgaagttacaga 3326298  T
Q  219 gatacttaatg 229  Q
    |||||| ||||    
T  3326297 gatactaaatg 3326287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 8373243 - 8373034
Alignment:
Q  19 aagtccttggttgttacttatctgagaggacaaaacaagaccagaggagtgcactattgaaattagagaaaattcccaaagttcaagtgcaacaggaatc 118  Q
    |||||||||| | |||||||||| |||||||| |||||||   ||| |||||| |||  ||||||  ||||||||||||     |||||| ||||  ||     
T  8373243 aagtccttggatcttacttatctaagaggacagaacaagaatggagaagtgcattatcaaaattaacgaaaattcccaacaacgaagtgctacagatatt 8373144  T
Q  119 gagaatcagcttcgatggtttagaagattatacgttaaaggatatannnnnnngacatatgttgtttcttcattggaaagaacagagctgatgttacaga 218  Q
    |||||||||||  ||||||||||||||||||||   ||||||||||       |||||||||||||||||||||||||||||||||| |||||| |||||    
T  8373143 gagaatcagctatgatggtttagaagattatacagaaaaggatatatttctt-gacatatgttgtttcttcattggaaagaacagagttgatgtcacaga 8373045  T
Q  219 gatacttaatg 229  Q
    ||| |||||||    
T  8373044 gatccttaatg 8373034  T

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