View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_high_9 (Length: 362)
Name: NF11385_high_9
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 38822786 - 38823130
Alignment:
| Q |
1 |
gataaaagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttgtggaggaaaaagtgtgcatttgggagtgagaatgggaagta |
100 |
Q |
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| T |
38822786 |
gataaaagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttatggaggaaaaagtgtgcatttgggagtgagaatgggaagta |
38822885 |
T |
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| Q |
101 |
aaagagaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaacattgcttcttctg |
200 |
Q |
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| T |
38822886 |
aaagagaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaacattgcttcttctg |
38822985 |
T |
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| Q |
201 |
ctttgaatccacttaacacgcagacaacacagaaatgaaaaccatgtatatatacacacacaccacagcctcaaannnnnnnnnnnnnnnnnngacaaaa |
300 |
Q |
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| T |
38822986 |
ctttgaatccacttaacacgcagacaacacagaaatgaaaaccatgtatatatacacacacaccacaacctcaaatttttttaatttttttttgacaaaa |
38823085 |
T |
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| Q |
301 |
caacctcaaaattaatgttttcagctattttggaaataaaatact |
345 |
Q |
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| T |
38823086 |
caacctcaaaattaatgttttcagctattttggaaataaaatact |
38823130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 204
Target Start/End: Original strand, 38817184 - 38817379
Alignment:
| Q |
6 |
aagtaaatggtgaaagaggaagagaagaaggtgagtgaaaatggaaggtttttgtggaggaaaaagtgtgcatttgggagtgagaatgggaagtaaaaga |
105 |
Q |
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| T |
38817184 |
aagtaaagggtgaaagaggaagagaaggag---agtgaaaatggaagggttttttgtaggaaaaagtgtggattttggaatgagaatgtgaaggaaaaga |
38817280 |
T |
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| Q |
106 |
gaaggagaatagtgatggaattatggaaagttcagaaagttttggaatcgccattccaactcgtaatcgacagactctcaacattgcttcttctgcttt |
204 |
Q |
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| T |
38817281 |
gaaagagaagattgaaggaatagtggaaagtgaagagagttttggaatcggtaatccaacgcgaaattgacaagctctcaacattgcttcttctgcttt |
38817379 |
T |
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