View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_low_11 (Length: 346)
Name: NF11385_low_11
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 32940484 - 32940807
Alignment:
| Q |
14 |
agaggtagagacttactctttcatattttgagcaagttccaatttgaaaatttgatcattttcgccccatagaagatgtatcctctgcaaagccatggtt |
113 |
Q |
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| T |
32940484 |
agaggtagagacttactctttcatattttgagcaagttccaatttgaaaatttgatcattttcgccccatagaagatgtatcctctgcaaagccatgatt |
32940583 |
T |
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| Q |
114 |
aatgagtaaaaacatactaggagtatatatgatcaaagcaatagggttat-nnnnnnnngcatgtacaatacaaccaaaatgtggt----tgaatgaagt |
208 |
Q |
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| T |
32940584 |
aatgagtaaaaacatactaggagtatatatgatcaaagcaatagggttataaaaaaaaagcatgtacaatacaaccaaaatgtggttgaatgaatgaagt |
32940683 |
T |
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| Q |
209 |
caataaaaaatttagataatttaaaattctaagcaatcttgacactttaactgaatttccatattcatgagta-ttcttttagtggacaaagtaattact |
307 |
Q |
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| T |
32940684 |
cataaaaaaatttagataattaaaaattctaagcaatcttgacactttaactgaatttccatattcataagtattttttttagtggacaaagtaattact |
32940783 |
T |
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| Q |
308 |
ggtttaatgttgggtgatttttat |
331 |
Q |
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|||||||||||||||||||||||| |
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| T |
32940784 |
ggtttaatgttgggtgatttttat |
32940807 |
T |
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