View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11385_low_18 (Length: 287)

Name: NF11385_low_18
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11385_low_18
NF11385_low_18
[»] chr2 (1 HSPs)
chr2 (13-272)||(40206977-40207236)
[»] chr4 (3 HSPs)
chr4 (72-194)||(21793780-21793902)
chr4 (113-194)||(4482608-4482689)
chr4 (97-178)||(38487696-38487777)
[»] chr1 (1 HSPs)
chr1 (97-185)||(42796516-42796604)
[»] chr8 (1 HSPs)
chr8 (103-192)||(41037332-41037421)
[»] chr3 (1 HSPs)
chr3 (76-167)||(55220931-55221022)
[»] chr7 (1 HSPs)
chr7 (75-188)||(40835126-40835239)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 40207236 - 40206977
Alignment:
Q  13 gcaaaggggttccaaacatcatactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207236 gcaaaggggttccaaacatcatactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaatta 40207137  T
Q  113 ttggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaagtatcaaattaatcacttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40207136 ttggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaagtatcaaattaatcacttt 40207037  T
Q  213 tttgggattaatagttttcttaatttagtttgtgacttatggttgttttgttgattaaat 272  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40207036 tttgggattaatagttttcttaatttagtttgtgacttatggttattttgttgattaaat 40206977  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 21793780 - 21793902
Alignment:
Q  72 tgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgct 171  Q
    |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||| |||||||| |||||||||||||| |  |||    
T  21793780 tgatggctacaacaaaggcacagctttaggtgctgaaatcattggtacctttgttcttgtctacactgtcttctctgccactgatcctaagaggaacgct 21793879  T
Q  172 agggattcccatgttcctgtaag 194  Q
    ||||| |||||||||||||||||    
T  21793880 agggactcccatgttcctgtaag 21793902  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 4482689 - 4482608
Alignment:
Q  113 ttggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaag 194  Q
    ||||||| |||||| | || |||||||| ||||||||||||||| | ||||||| ||| || || |||||||||||||||||    
T  4482689 ttggtacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaag 4482608  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 38487777 - 38487696
Alignment:
Q  97 ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggatt 178  Q
    ||||||| ||| || |||||||||||||| ||||| |||||| | |||||||||| | |||||||||||| |||||| ||||    
T  38487777 ttaggtgttgagatcattggtacctttgtattggtatacactttgttctctgctatttatcctaagagaaatgctagagatt 38487696  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 42796516 - 42796604
Alignment:
Q  97 ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgt 185  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  42796516 ttaggtgctgagattgttggtacctttgttttggtttacaccgttttctctgccactgatcctaagagaagtgctagagattcacatgt 42796604  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 41037332 - 41037421
Alignment:
Q  103 gctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgta 192  Q
    ||||| ||| |||||||||||||| | ||||||||||||||||||||||||||| | ||||||| |||||| || || ||||||||||||    
T  41037332 gctgagattgttggtacctttgttcttgtctacactgttttctctgctactgatgccaagagaaatgctagagactctcatgttcctgta 41037421  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 55220931 - 55221022
Alignment:
Q  76 ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaag 167  Q
    ||||||||||||||| ||||  ||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||| || ||||||||    
T  55220931 ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgttttctctgctactgaccccaagagaag 55221022  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 40835239 - 40835126
Alignment:
Q  75 tggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgctactgatcctaagagaagtgctagg 174  Q
    |||||| |||||||| ||||  |||||||||||||| ||||| ||||||||| | || ||||| || |||||||| || ||||| || |||| ||||||     
T  40835239 tggttatagcaaaggaactgggttaggtgctgaaataattggaacctttgttcttgtttacaccgtgttctctgccacagatcccaaaagaaatgctaga 40835140  T
Q  175 gattcccatgttcc 188  Q
    || || ||||||||    
T  40835139 gactctcatgttcc 40835126  T

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