View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_low_3 (Length: 553)
Name: NF11385_low_3
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 7564772 - 7564329
Alignment:
| Q |
1 |
aaggattcttggactaaattgttcagtgttccattcacagaattcattgattatttctatgcacgtctgctttttatttatgaggaggatgaccaagtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| | |||||||||| |||||||||||||||||||||| |
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| T |
7564772 |
aaggattcttggactaaattgttcagtgttccattcaaagaattcagtgataattgctatgcacctgtgctttttatctatgaggaggatgaccaagtgt |
7564673 |
T |
|
| Q |
101 |
tgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatgtcgcttttaccgatttctcgtctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
7564672 |
tgcttgacttttgtggtaagttatatgtttacaattataagaatggtaccgtaaagatttcggggattcaaaatctcgcttttaccgatttctcctctaa |
7564573 |
T |
|
| Q |
201 |
tgtctatgttgaaagtctcatatcaccttgacctacacgctttgctatgttgggtctcagagattctccatatgtgttttcgtcttatgtgttatttatt |
300 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7564572 |
tgtctatgttgagagtctcgtatcaccttgacctacacgctttgctatgttggatctcagagattctccatatgtgttttcgtcttatgtgttatttatt |
7564473 |
T |
|
| Q |
301 |
taatgttgctttgagttttttgctatttttctacatattggtactgttctctgtaatatttatttactgtcatgaatttatattgtttcattctctatga |
400 |
Q |
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| T |
7564472 |
taatgttgctttgagttttttgctatttttctacatattggtactgttctctgtaatatttatttactgtcatgaatttatattgtttcattctctatga |
7564373 |
T |
|
| Q |
401 |
gcattagcaatcacccaattgttgcattcacagattccattgat |
444 |
Q |
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| T |
7564372 |
gcattagcaatcacccaattgttccattcacagattccattgat |
7564329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 538
Target Start/End: Complemental strand, 7564330 - 7564282
Alignment:
| Q |
490 |
attgatactattaacctttatcttgctaattaatgagaggtggttatgc |
538 |
Q |
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| T |
7564330 |
attgatactattaacctttatcttgctacttaatgagaggtggttatgc |
7564282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 176599 - 176668
Alignment:
| Q |
200 |
atgtctatgttgaaagtctcatatcaccttgacctacacgctttgctatgttgggtctcagagattctcc |
269 |
Q |
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| T |
176599 |
atgtctatgttgagagtctcatatcaccttgacctacttgctttgctctgctggctctcaaagattctcc |
176668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 370608 - 370569
Alignment:
| Q |
196 |
tctaatgtctatgttgaaagtctcatatcaccttgaccta |
235 |
Q |
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| T |
370608 |
tctaatgtctacgttgagagtctcatatcaccttgaccta |
370569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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