View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11385_low_5 (Length: 470)
Name: NF11385_low_5
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_low_5 |
 | |
|
| [»] scaffold1171 (1 HSPs) |
| | |
|
| [»] scaffold0250 (2 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 9944166 - 9944384
Alignment:
| Q |
19 |
gagttatgttgagtcacattaagatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaatta |
118 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9944166 |
gagttatgttgagtcactttaagctttgtagggctaagaataaggcttcggaactgattcatggtggaatagatgagaaatattctcatcttagaaatta |
9944265 |
T |
|
| Q |
119 |
tgctgaggaattgatgaggagtaatccaggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaaggatatgtatgctttaa |
218 |
Q |
| |
|
|| ||||||||||||||||| |||| | ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9944266 |
tgttgaggaattgatgaggattaattcgggtagcattgttaggattaaatgtgcagttggagatgcaggaccagtgtttgaaaggatatgtatgctttaa |
9944365 |
T |
|
| Q |
219 |
tgcatgcaagagggaattt |
237 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
9944366 |
tgcatgcaagagggcattt |
9944384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 19695118 - 19695224
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| |||||||| |||||| | |||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
19695118 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc |
19695217 |
T |
|
| Q |
145 |
caggtag |
151 |
Q |
| |
|
| ||||| |
|
|
| T |
19695218 |
ctggtag |
19695224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 19705703 - 19705809
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| |||||||| |||||| | |||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
19705703 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgaacaatatgcatatctgtgaaactatgctgaggaattgttgaggagcaatc |
19705802 |
T |
|
| Q |
145 |
caggtag |
151 |
Q |
| |
|
| ||||| |
|
|
| T |
19705803 |
ctggtag |
19705809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 432
Target Start/End: Original strand, 19695388 - 19695507
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt |
412 |
Q |
| |
|
|||||| ||||||||| ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| ||||||| || || | | |
|
|
| T |
19695388 |
gcaattaggaaagatgacaacaatcaaatgttaccaattgcatttgcagtagtggaagctgaaacaaaggatgcatgggactggtttccggaactgttat |
19695487 |
T |
|
| Q |
413 |
tgggtgacttgaatggtatt |
432 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19695488 |
tgggtgacttgaatggtatt |
19695507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 432
Target Start/End: Original strand, 19705973 - 19706092
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt |
412 |
Q |
| |
|
|||||| ||||||||| ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| ||||||| || || | | |
|
|
| T |
19705973 |
gcaattaggaaagatgacaacaatcaaatgttaccaattgcatttgcagtagtggaagctgaaacaaaggatgcatgggactggtttccggaactgttat |
19706072 |
T |
|
| Q |
413 |
tgggtgacttgaatggtatt |
432 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19706073 |
tgggtgacttgaatggtatt |
19706092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 29921739 - 29921634
Alignment:
| Q |
40 |
agatttatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggag |
139 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||| || ||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
29921739 |
agatatatagggctaagaagaaggctttaaaacttatccatggtgcaatagatgagcaatatgctcatctcagaaattatgctgaagaattgatgaggag |
29921640 |
T |
|
| Q |
140 |
taatcc |
145 |
Q |
| |
|
|||||| |
|
|
| T |
29921639 |
taatcc |
29921634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 404
Target Start/End: Complemental strand, 3343510 - 3343149
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
3343510 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
3343411 |
T |
|
| Q |
145 |
caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaag--gatatgtatgctttaatgcatgcaagagggaatttgcaat |
242 |
Q |
| |
|
| || |||| || | |||||| ||| || | | ||||| ||||| || ||||| || |||||| || ||| |||| |||||||||| |||||||| |
|
|
| T |
3343410 |
ctggaagcagtgttttgattaagtgtaaagatagtgatgctgggcctgtttttgagagaatatatgtttgtttttatgcttgcaagagggcatttgcaac |
3343311 |
T |
|
| Q |
243 |
aacctgtatgcccttgatcagccttgacgtatgcttttaaaaaggcatgtatgttggacaccttttggctgcaattgggaaagatgggaacaaccagatg |
342 |
Q |
| |
|
|| |||| || || || | || || | || |||| ||||| | ||| |||||| | || || ||||||||||||||||| ||||| || ||| |
|
|
| T |
3343310 |
tacttgtagaccattaattggtctagatgggtgttttttgaaaggaagagatggaggacacttattagcagcaattgggaaagatggcaacaatcaaatg |
3343211 |
T |
|
| Q |
343 |
ctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga |
404 |
Q |
| |
|
| || |||||||||| | |||| |||||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
3343210 |
ttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggactagtttcttga |
3343149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 455
Target Start/End: Complemental strand, 29921477 - 29921336
Alignment:
| Q |
314 |
caattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttctttt |
413 |
Q |
| |
|
||||||||||||||| ||| || || | |||||| | |||||||| | ||||||||| | |||||||||| |||| || ||||||||||| ||||| || |
|
|
| T |
29921477 |
caattgggaaagatgagaataatcaaacgctgccaaatgcatttgcagtagtagaagttgaaacaaaggaagcatgagactggtttcttgatcttctatt |
29921378 |
T |
|
| Q |
414 |
gggtgacttgaatggtattcaagcaaagaagcggtctttcat |
455 |
Q |
| |
|
| | | |||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
29921377 |
gactaatttgaatggcattcaagcaaaaaagtggtctttcat |
29921336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 26358571 - 26358625
Alignment:
| Q |
77 |
tcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
131 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26358571 |
tcatggtgctatagatgagcaatatgctcatcttaagaattatgctgaggaattg |
26358625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1171 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold1171
Description:
Target: scaffold1171; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 240 - 134
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
240 |
tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
141 |
T |
|
| Q |
145 |
caggtag |
151 |
Q |
| |
|
| ||||| |
|
|
| T |
140 |
ctggtag |
134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 25301 - 25201
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
25301 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
25202 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
25201 |
c |
25201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 404
Target Start/End: Complemental strand, 25031 - 24940
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga |
404 |
Q |
| |
|
||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| | ||||||||||||||||| | ||||||||| |
|
|
| T |
25031 |
gcaattgggaaagatggcaacaatcaaatgttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggacttgtttcttga |
24940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 17099120 - 17099220
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
17099120 |
tatagggctaagaagaaggctttagaacttatccatggtgccatagatgagcaatattcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
17099219 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
17099220 |
c |
17099220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 17099390 - 17099481
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttga |
404 |
Q |
| |
|
||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
17099390 |
gcaattgggaaagatggcaacaatcaaatgttaccaattgcatttgcagtagtggaagctgagacaaaggattcatgggactggtttcttga |
17099481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 26072007 - 26071919
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct |
401 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||| |||||||||| | || || ||| |||| ||||| || |||||||||||||| |
|
|
| T |
26072007 |
gcaattggtaaagatgggaataatcagatgatgcccattgcatttgctgttgtggaggctgaaaccaaggaatcttgggattggtttct |
26071919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 20590472 - 20590372
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
20590472 |
tatagggctaagaagaaggctttagaacttatccatggtggcatagatgagcaatatgcgcatctgagaaactatgctgaggaattgttgaggagcaatc |
20590373 |
T |
|
| Q |
145 |
c |
145 |
Q |
| |
|
| |
|
|
| T |
20590372 |
c |
20590372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 427
Target Start/End: Complemental strand, 20590202 - 20590088
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttt |
412 |
Q |
| |
|
||||||||||||||||| ||||| || ||| | || |||||||||| | |||| |||||| ||||||||||| ||||||| |||||||| || || | | |
|
|
| T |
20590202 |
gcaattgggaaagatggtaacaatcaaatgttaccaattgcatttgcagtagtggaagcttaaacaaaggatgcatgggactggtttctggaactgttat |
20590103 |
T |
|
| Q |
413 |
tgggtgacttgaatg |
427 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20590102 |
tgggtgacttgaatg |
20590088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 241
Target Start/End: Complemental strand, 11332735 - 11332537
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||||||||||| |||| |||||| || || ||||||| ||||||||||||||| | ||| | ||| |||||||| ||||||| | |||||| ||| |
|
|
| T |
11332735 |
tatagggctaagaagaaggatttggagcttatacatggtgccatagatgagcaatatgcgcatatgagatattatgctaaggaatttaggaggagcaatt |
11332636 |
T |
|
| Q |
145 |
caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaagga--tatgtatgctttaatgcatgcaagagggaatttgcaa |
241 |
Q |
| |
|
| |||||||||| | |||||| |||||| | || |||| ||| ||||| ||| |||| | ||||| ||||| |||||||||||| || |||||||| |
|
|
| T |
11332635 |
ctggtagcactgtgaagattaagtgtgcattaggtgatggaggaccagttttttaaagaatgtatgtgtgcttctatgcatgcaagatggcatttgcaa |
11332537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 428
Target Start/End: Original strand, 14767073 - 14767458
Alignment:
| Q |
45 |
tatagggctaagaataaggctttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattgatgaggagtaatc |
144 |
Q |
| |
|
|||||| ||||||| |||||||||||||| || ||||||| ||||||||||||||| ||| | | ||| |||||| |||||||| ||||||| |||| |
|
|
| T |
14767073 |
tataggactaagaagaaggctttggaacttatccatggtgccatagatgagcaatatgtgcatttgaaaaactatgctaaggaattgttgaggagcaatc |
14767172 |
T |
|
| Q |
145 |
caggtagcactgataggattaaatgtgcagttggagatgcagggccagtgtttgaaag--gatatgtatgctttaatgcatgcaagagggaatttgcaat |
242 |
Q |
| |
|
| ||||| || | |||||| ||||| | | | |||| |||||||| || |||| |||||| || ||| ||||||||||||||| |||||||| |
|
|
| T |
14767173 |
ctaatagcagtgtgaagattaagtgtgctgatagtgatgttgggccagttttccaaagaatatatgtgtgtttttatgcatgcaagagggcatttgcaac |
14767272 |
T |
|
| Q |
243 |
aacctgtatgcccttgatcagccttgacgtatgcttttaaaaaggcatgtatgttggacaccttttggctgcaattgggaaagatgggaacaaccagatg |
342 |
Q |
| |
|
|| |||| ||| || || || || || | || ||| ||||| | ||| |||||| | || || ||||||| ||||||||| ||||| || ||| |
|
|
| T |
14767273 |
tacttgtaggccattaattagtctagatgggtgttttctgaaaggaagagatgggggacacttattagcagcaattgagaaagatggaaacaatcaaatg |
14767372 |
T |
|
| Q |
343 |
ctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttcttgaccttcttttgggtgacttgaatgg |
428 |
Q |
| |
|
| || |||||||||| | ||||||||||| |||||||||| |||| || | ||||||||| || | |||| |||||||||||| |
|
|
| T |
14767373 |
ttaccaattgcatttgcagtagtagaagctgaaacaaaggaagcatgagactcgtttcttgaactgttattggctgacttgaatgg |
14767458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 271719 - 271654
Alignment:
| Q |
66 |
ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
131 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
271719 |
ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
271654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 180543 - 180608
Alignment:
| Q |
66 |
ttggaactgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
131 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
180543 |
ttggaaatgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
180608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 180792 - 180880
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct |
401 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||| |||||||||| | || || ||| |||| ||||| || |||||||||||||| |
|
|
| T |
180792 |
gcaattggtaaagatgggaataatcagatgatgcccattgcatttgctgttgtggaggctgaaaccaaggaatcttgggattggtttct |
180880 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 20895118 - 20895060
Alignment:
| Q |
73 |
tgattcatggtggaatagatgagcaatattctcatcttagaaattatgctgaggaattg |
131 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
20895118 |
tgattcatggtgctatagatgagcaatatgctcatcttaggaattatgctgaggaattg |
20895060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 20894876 - 20894788
Alignment:
| Q |
313 |
gcaattgggaaagatgggaacaaccagatgctgcctattgcatttgtaatagtagaagctaaaacaaaggattcatgggattggtttct |
401 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||| ||||||||||| | || || ||| |||| ||||| || |||||||| ||||| |
|
|
| T |
20894876 |
gcaattggtaaagatgggaataatcagatgatgcccattgcatttgttgttgtggaggctgaaaccaaggaatcttgggattgttttct |
20894788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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