View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11385_low_9 (Length: 399)
Name: NF11385_low_9
Description: NF11385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11385_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 249 - 389
Target Start/End: Complemental strand, 40877172 - 40877032
Alignment:
| Q |
249 |
gattttagatgcattatttctaaaataaagtttctatttaggacttcttatcaaatgtcgccgaggtacttgttagcatttcccatgccaaaatactact |
348 |
Q |
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| T |
40877172 |
gattttagatgcattatttctaaaataaagtttctatttaggacttcttatcaaatgccgccgaggtacttgttagcatttcccatgccaaaatactact |
40877073 |
T |
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| Q |
349 |
atcaaagaataaagatttaattgcagttttcaccccctatg |
389 |
Q |
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| T |
40877072 |
atcaaagaataaagacttaattgcagttttggccccctatg |
40877032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 40877401 - 40877231
Alignment:
| Q |
19 |
ctatgctctaatgatcgatatcaatagaaagatcacgaagaaaaatgatagtcccaccacttactataatcgttttatttcaaataaaaaattatacggt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40877401 |
ctatgctctaatgatcgatatcaatagaaagatcacgaagaaaaatgatagtcccaccacttactataatcgttttatttcaaataaaaaattataccgt |
40877302 |
T |
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| Q |
119 |
acc--nnnnnnnncattacttttattagaaggaggtcaagttaatcagtgtcctaagaacatttattaagaagc |
190 |
Q |
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| T |
40877301 |
accaaaaaaaaaacattacttttattaaa---aggtcaagttaatcggtgtcctaagaacatttattaagaagc |
40877231 |
T |
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