View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_high_13 (Length: 333)
Name: NF11386A_high_13
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_high_13 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5823586 - 5823266
Alignment:
| Q |
1 |
agttttggaggtgactcgtcaagtggtaaaaattcaaagtaacccatgtttggcataatggtgtaagaaacttcattaggttctgtcataggcttaaggt |
100 |
Q |
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| T |
5823586 |
agttttggaggtgactcgtcaagtggtaaaaattcaaagtaacccatgtttggcataatggtgtaagaaacttcattaggttctgtcataggcttaaggt |
5823487 |
T |
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| Q |
101 |
taagtccaaaatagcattcagatgaagcatatattgtacatggctttggtaggttaccactgtaataatcaagggttggaatgtactgagccatagcacc |
200 |
Q |
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| T |
5823486 |
taagtccaaaatagcattcagatgaagcatatattgtacatggttttggtaggttaccactataataatcaagggtaggaatgtactgagccatagcacc |
5823387 |
T |
|
| Q |
201 |
agtgacaataacctcaaggtactttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgttatgaaatttgcttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5823386 |
agtgacaataacctcaaggtactttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgttatgaaatttgcttgt |
5823287 |
T |
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| Q |
301 |
tcagggtcaggtttcaatatt |
321 |
Q |
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| T |
5823286 |
tcagggtcaggtttcaatatt |
5823266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 5832502 - 5832763
Alignment:
| Q |
23 |
gtggtaaaaattcaaagtaacccatgtttggcataatggtgtaagaaacttcattaggttctgtcataggcttaaggttaagtccaaaatagcattcaga |
122 |
Q |
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| T |
5832502 |
gtggtaaaaattcaaagtaacccatgtttggcataatggtgtaagaaacttcatttggttctgtcataggcttaaggttaagaccaaaataacattcaga |
5832601 |
T |
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| Q |
123 |
tgaagcatatattgtacatggctttggtaggttaccactgtaataatcaagggttggaatgtactgagccatagcaccagtgacaataacctcaaggtac |
222 |
Q |
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| T |
5832602 |
tgaagcatacattgtacatggttttggaaggttaccactgtaataatcaagggtaggaatgtactgagccatagcaccagtgacaataacttcaagatac |
5832701 |
T |
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| Q |
223 |
tttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgt |
284 |
Q |
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| T |
5832702 |
tttgtgttaggccagattcttgggattatacgttcccaattgtctcctgaacattcttttgt |
5832763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 266
Target Start/End: Complemental strand, 78323 - 78088
Alignment:
| Q |
31 |
aattcaaagtaacccatgtttggcataatggtgtaagaaacttcattaggttctgtcataggcttaaggttaagtccaaaatagcattcagatgaagcat |
130 |
Q |
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||||||||||| ||||||||||||| |||||||| ||||| ||| |||| ||| || ||||||||||||||||| |||||||| || ||||||| |
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| T |
78323 |
aattcaaagtaggccatgtttggcatgatggtgtatgaaacctcagatggtttgcacattggattaaggttaagtccaaagtagcattctgaggaagcat |
78224 |
T |
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| Q |
131 |
atattgtacatggctttggtaggttaccactgtaataatcaagggttggaatgtactgagccatagcaccagtgacaataacctcaaggtactttgtgtt |
230 |
Q |
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| || ||||||| |||| ||||||||| |||| ||| ||||||||||| ||||||||||||||||| ||||| || || | || || ||||| |
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| T |
78223 |
acatagtacatgaaagaggtaacccaccactgtagtaattaagtgttggaatgtattgagccatagcaccagttacaatgacatctaaatatttggtgtt |
78124 |
T |
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| Q |
231 |
aggccaaattcttgggattatacgttcccaattttc |
266 |
Q |
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||||||||| || |||||| | |||||||||||| |
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| T |
78123 |
aggccaaatctttatgattattccttcccaattttc |
78088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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