View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_high_17 (Length: 311)
Name: NF11386A_high_17
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 12065002 - 12065279
Alignment:
| Q |
16 |
attgcaatgaagttgaaaaattgaaagaattttgaaatcttagccattgagagactaagttcaaag--acaaaattgttaacaagatttgaagaatgtgg |
113 |
Q |
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| T |
12065002 |
attgaaatgaagttgaaaaattgaaagaattttgaaatcttagccattgagagactaagttcaaaagaacaaaattgttaacaagatttgaagaatgtgg |
12065101 |
T |
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| Q |
114 |
ccgcgtcaggatgtttgatattgcagagaattgtggtcaaatgcagccgatgcagacaaaattcaagaagaaagttgtcaacaaggttttaaaacgtggt |
213 |
Q |
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| T |
12065102 |
ccgcgtcaggatgtttgatattgcagagaatcgtggtcaa-tgcagccgatgcagacaaaattcaagaagaaagttgtcaacaaggttttaaaacgtggt |
12065200 |
T |
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| Q |
214 |
cacgccacgatctttgatattgcagagaatcgtggtcagatgaagttgatgttctgaggctgatgtggcgtcaattgtg |
292 |
Q |
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| T |
12065201 |
cacgccacgatctttgatattgcagagaatcgtggtcagatgaagttgatgttatgaggctgctgtggcgtcaattgtg |
12065279 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 18363485 - 18363457
Alignment:
| Q |
128 |
ttgatattgcagagaattgtggtcaaatg |
156 |
Q |
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| T |
18363485 |
ttgatattgcagagaattgtggtcaaatg |
18363457 |
T |
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