View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_high_19 (Length: 307)
Name: NF11386A_high_19
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 49956497 - 49956201
Alignment:
| Q |
11 |
cagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagt |
110 |
Q |
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| T |
49956497 |
cagagaataaaatgatgaatgtgttaaaataagaaaatccaaacaaattacatatatatgaaaaggactatgtatatgtaatctaagagatatagcaagt |
49956398 |
T |
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| Q |
111 |
tttgaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatga |
210 |
Q |
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| T |
49956397 |
tttgaaagaataaaacaacaaatgtggggttaagtgtatccggccccaagttagattgcaaaaaccctaatgatagatactgatagcaacctttccatga |
49956298 |
T |
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| Q |
211 |
agcaagtctaagtcccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccc |
307 |
Q |
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| T |
49956297 |
agcaagtctaagtcccctgggtagaattttacacccagaaaggaggcattgagctattgtggaccatacatgacctgtttctcaaacatgtcccccc |
49956201 |
T |
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