View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_high_6 (Length: 411)
Name: NF11386A_high_6
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_high_6 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 45269480 - 45269076
Alignment:
| Q |
7 |
ctaaattagagaaattgtgatagtttagacacactaaattgaaagtatattaaaaaacataaaaaggttgcattaagttctcttcaagcttctgtcaaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269480 |
ctaaattagagaaattgtgatagtttagacacactaaattgaaagtatattaaaaaacataaaaaggttgcattaagttctcttcaagcttctgtcaaaa |
45269381 |
T |
|
| Q |
107 |
aagaaatctcttcaagcaagacacgaagttacatcatcattatgttataagatatataaaaacagaaactacaggaacaatctataactcaaattggctt |
206 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269380 |
aagaaatctcttcaagcaagacacgaatttacatcatcattatgttataagatatataaaaacagaaactacaggaacaatctataactcaaattggctt |
45269281 |
T |
|
| Q |
207 |
acaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttcgctcgaggaattttgttagccatgaagaagtagcttaaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45269280 |
acaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttcgctcgaggaattttgttagccattaagaagtagcttaaca |
45269181 |
T |
|
| Q |
307 |
taaaagtataaaaccttatgaatgactgagtagtgagtactgtctgtaatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269180 |
taaaagtataaaaccttatgaatgactgagtagtgagtactgtctataatgaagtttagattgacaataaaagcaaagaggaatactaaactatggcttt |
45269081 |
T |
|
| Q |
407 |
tcaca |
411 |
Q |
| |
|
||||| |
|
|
| T |
45269080 |
tcaca |
45269076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 16867577 - 16867523
Alignment:
| Q |
202 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
256 |
Q |
| |
|
|||||||||| ||||| | |||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
16867577 |
ggcttacaagttttccttcatgaagattttgagcaagtatgatcttgaaaaagtg |
16867523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 16872337 - 16872283
Alignment:
| Q |
202 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
256 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||| |||||| |||||||| ||||| |
|
|
| T |
16872337 |
ggcttacaagctttccttcatgaagattttgagcaagtattatcttgaaaaagtg |
16872283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 16862187 - 16862123
Alignment:
| Q |
202 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtgaactggcttc |
266 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||| |||||| |||||||| ||||| | ||||||| |
|
|
| T |
16862187 |
ggcttacaagctttccttcctgaagattttgagcaagtattatcttgaaaaagtggattggcttc |
16862123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 17605112 - 17605064
Alignment:
| Q |
202 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaa |
250 |
Q |
| |
|
|||||||||| ||||| || |||||||||||| ||||||||||||||| |
|
|
| T |
17605112 |
ggcttacaaggtttccttggagaaggttttgagcaagtatgatcttgaa |
17605064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University