View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_1 (Length: 712)

Name: NF11386A_low_1
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_1
NF11386A_low_1
[»] chr7 (1 HSPs)
chr7 (12-712)||(47116765-47117461)


Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 12 - 712
Target Start/End: Original strand, 47116765 - 47117461
Alignment:
Q  12 agatggacatcactccaagcttcctcatacccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggta 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  47116765 agatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggta 47116864  T
Q  112 attacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116865 attacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatc 47116964  T
Q  212 aaatcacaaagcaaggtaagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattatttttaatttcttgttttgtagatggataggcgg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47116965 aaatcacaaagcaaggtaagcaatatcaacgtatcaatgactcga----tcaccttttaacgattatttttaatttcttgttttgtagatggataggcgg 47117060  T
Q  312 agaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccatcttcgccggtgatgatgtcgccattgaaccgacatgctcgtgcaggttcca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  47117061 agaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccgtcttcaccggtgatgatgtcgccattgaatcgacatgctcgtgcaggttcca 47117160  T
Q  412 caggttctgccatgaacaacatcgggagaacacaaaacaatgccacaaaagccgctgctcaacgactcgcacaagttatgtcgcatcaaacaattgatga 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  47117161 caggttctgccatgaacaacatcgggagaacacaaaacaatgccacaaaagccgctgctcaacgacttgcacaagttatgtcgcatcaaacaattgatga 47117260  T
Q  512 agaagaagacgatgacgatgttcctcttgactattctgcaattagtggcactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccct 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47117261 agaagaagacgatgacgatgttcctcttgactattctgcaattagtggcactagaagcatcggacttggtggtggaagagcagcgcggcctcgctcccct 47117360  T
Q  612 gtggtagctattattcctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagacagtt 711  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47117361 gtggtagctattatttctttcttacttgtatttatattgatatgttgttgaatgttcattcatccaattcgatgatgttgttgcattctattagacagtt 47117460  T

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