View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_10 (Length: 495)
Name: NF11386A_low_10
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 473
Target Start/End: Original strand, 6609599 - 6610066
Alignment:
| Q |
6 |
agtagcatagatccatcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatctaacggtatat |
105 |
Q |
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| T |
6609599 |
agtagcacagatccttcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatccaacggtatat |
6609698 |
T |
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| Q |
106 |
taattgacagtgtaaacaatcatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgag |
205 |
Q |
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| T |
6609699 |
taattgacagtgtaaaaaataatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgag |
6609798 |
T |
|
| Q |
206 |
tcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtg |
305 |
Q |
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| T |
6609799 |
tcattagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaagttgtaatagagttgagagcacacatttg |
6609898 |
T |
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| Q |
306 |
gagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatt |
405 |
Q |
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| T |
6609899 |
gagtaagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatt |
6609998 |
T |
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| Q |
406 |
tgttgagtttaacaaacataattagaattgtgtgtgacaataagctgtaagctgaaataatttataga |
473 |
Q |
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| T |
6609999 |
tgttgagtttaacaaacataattagaattgtgtgtgacaataagctgtaagctgaaataatttataga |
6610066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 142 - 387
Target Start/End: Original strand, 6602220 - 6602465
Alignment:
| Q |
142 |
cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca |
241 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||| |
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| T |
6602220 |
cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca |
6602319 |
T |
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| Q |
242 |
attctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaa |
341 |
Q |
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| T |
6602320 |
attttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaataaaaa |
6602419 |
T |
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| Q |
342 |
catgtttgttagagacacactccatgagttgaaactatgatgacaa |
387 |
Q |
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| T |
6602420 |
catgtttgttagagacacactccatgagctgaaactatgttgacaa |
6602465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 6602097 - 6602143
Alignment:
| Q |
6 |
agtagcatagatccatcacatccctatgtaacacaaaaatgaaataa |
52 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6602097 |
agtagcacagatccatcacatccctatgtaacacaaaaatgaaataa |
6602143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 473
Target Start/End: Original strand, 6602462 - 6602518
Alignment:
| Q |
417 |
acaaacataattagaattgtgtgtgacaataagctgtaagctgaaataatttataga |
473 |
Q |
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|||||| ||||||||| | |||||||||||||| |||||||||||| |||||||||| |
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| T |
6602462 |
acaaacttaattagaactttgtgtgacaataagttgtaagctgaaacaatttataga |
6602518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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