View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_102 (Length: 361)
Name: NF11386A_low_102
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 12843699 - 12843354
Alignment:
| Q |
1 |
gaggaattggcttgatttcgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtcc |
100 |
Q |
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| T |
12843699 |
gaggaattggcttgatttcgaagtggatcagagtgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtcc |
12843600 |
T |
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| Q |
101 |
attgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagat |
200 |
Q |
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| T |
12843599 |
attgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagat |
12843500 |
T |
|
| Q |
201 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaata |
300 |
Q |
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| T |
12843499 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaata |
12843400 |
T |
|
| Q |
301 |
gaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
346 |
Q |
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| T |
12843399 |
gaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
12843354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 12861782 - 12862057
Alignment:
| Q |
1 |
gaggaattggcttgatttcgaagtggatcagattgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtcc |
100 |
Q |
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|||||| || |||| |||| |||||||||||| | | ||||||| ||||| ||||||||| |||||||||||||| | ||||| |||||||||||||| |
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| T |
12861782 |
gaggaaatgtcttggtttcaaagtggatcagagtattgaagttggtaggagtaattggaatcaagagaatctttatgcacatcaagttgcttatgcgtcc |
12861881 |
T |
|
| Q |
101 |
attgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagat |
200 |
Q |
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||||||||||||| ||| ||| |||||||||| | | |||||||||||||||| ||||||| |||||||| || |||||||||||||||||||||||| |
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| T |
12861882 |
attgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagat |
12861981 |
T |
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| Q |
201 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
276 |
Q |
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| T |
12861982 |
tatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
201 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
275 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
179 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
219 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
299 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
346 |
Q |
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|||||| ||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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