View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_113 (Length: 351)

Name: NF11386A_low_113
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_113
NF11386A_low_113
[»] chr4 (5 HSPs)
chr4 (21-335)||(7055597-7055911)
chr4 (21-335)||(14463418-14463732)
chr4 (21-97)||(19847333-19847409)
chr4 (21-97)||(19848181-19848257)
chr4 (22-94)||(19848720-19848792)
[»] chr8 (3 HSPs)
chr8 (21-337)||(8211036-8211352)
chr8 (72-337)||(9289327-9289592)
chr8 (21-93)||(9289249-9289321)
[»] chr3 (5 HSPs)
chr3 (21-337)||(51423464-51423779)
chr3 (21-341)||(11685098-11685384)
chr3 (77-183)||(12840780-12840886)
chr3 (21-130)||(32060088-32060197)
chr3 (115-181)||(32060211-32060277)
[»] scaffold0442 (1 HSPs)
scaffold0442 (27-337)||(13385-13694)
[»] chr2 (1 HSPs)
chr2 (21-335)||(38979217-38979534)
[»] scaffold0167 (1 HSPs)
scaffold0167 (21-288)||(20220-20485)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 7055911 - 7055597
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
7055911 ggaaagcatcattgcaaacataggtatctaaatttatatcatacatgagatcattatttgattagatcattatctatctgtagcatatataaacccaaag 7055812  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
7055811 cattgttttgatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagtttt 7055712  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagac 320  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||    
7055711 atgcggttccacaatttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgaatttttttccattaattaaac 7055612  T
321 tctgcagaattttga 335  Q
    |||||||||||||||    
7055611 tctgcagaattttga 7055597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 14463732 - 14463418
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
14463732 ggaaagcatcattgcaaacataggtatctaaatttatatcatccatgagatcattatttgattagatcattatctgtctgtagcatatataaacccaaag 14463633  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
14463632 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagtttt 14463533  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagac 320  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||| ||    
14463532 atgcggttccacaatttttcctaagagagacaaacaattgaaggagaatagagattagaagtttttataatttgtttgaatttttttccattaattaaac 14463433  T
321 tctgcagaattttga 335  Q
    | |||||||||||||    
14463432 tatgcagaattttga 14463418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 19847333 - 19847409
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctat 97  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
19847333 ggaaagcatcattgcaaacaaaggtatcgaaatttatatcatacatgagatcattatttgattagatcattatctat 19847409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 19848181 - 19848257
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctat 97  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||||||||    
19848181 ggaaagcatcattgcaaacaaaggtatcgaaatttatatcatacatgagattattatctgattagatcattatctat 19848257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 19848720 - 19848792
Alignment:
22 gaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatc 94  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||| |||| |||||||||    
19848720 gaaagcatcattgcaaacaaatgtatcgaaatttatatcatacatgagattattatttaattagatcattatc 19848792  T

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Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 8211036 - 8211352
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
8211036 ggaaagcatcattgcaaataaaggtatctaaatttatatcacagacgagttcattatttgattggatcattatctatctgtagcatatataaacccaaag 8211135  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
8211136 cattgttttgatgtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaatcccacttagaattgagcagtttt 8211235  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagac 320  Q
    |||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
8211236 atgtggttccataatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattaaac 8211335  T
321 tctgcagaattttgact 337  Q
    |||||||||||||||||    
8211336 tctgcagaattttgact 8211352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 72 - 337
Target Start/End: Original strand, 9289327 - 9289592
Alignment:
72 cattatttgattaaatcattatctatctgtagcatatataaacccaaagcattgtttttatgtaacctattttacttcccattttaccgtaaactaaaat 171  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
9289327 cattatttgattagatcattatctatctgtagcatatataaatccaaagcattgttttgatgtaacctattttacttcccattttaccgtaaactaaaat 9289426  T
172 gccattgttgctattaataaatcaatcccacttagaattgagcagttttatgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcg 271  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
9289427 gccattgttgctattcataaatcaatcccacttagaattgagcagttttatgcggttccacaatttttcccaagagagacaaacaattgaaggagcatca 9289526  T
272 aggttagaagtttttataatttgtttgaatttttatccattaattagactctgcagaattttgact 337  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
9289527 aggttagaagtttttataatttgtttgaatttttttccattaattaaactctgcagaattttgact 9289592  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 9289249 - 9289321
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
9289249 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagaccattatttgattagatcattat 9289321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 51423464 - 51423779
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
51423464 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagaggagatcattatttgattagatcattatccatctgtagcatatataaacccaaag 51423563  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| ||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
51423564 cattgttttgatgtaacctattttacttcccattttactataaactaaaatgttattgttgctattaataaatcaatcccacttagaattgagcagtttt 51423663  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagac 320  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||    
51423664 atgcggttccacaatttttcccaagagagacaaacaattgaaggagcatccaggttagaagtttttataatttgtttgaattttt-tctattaattaaac 51423762  T
321 tctgcagaattttgact 337  Q
    |||| ||||||||||||    
51423763 tctgtagaattttgact 51423779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 11685098 - 11685384
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
11685098 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatca----------------ttatctatctgtagcatatataaacccaaag 11685181  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
11685182 cattgttttgatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccac------------------ 11685263  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagac 320  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
11685264 atgcggttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttttccattaattagac 11685363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 12840886 - 12840780
Alignment:
77 tttgattaaatcattatctatctgtagcatatataaacccaaagcattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccat 176  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
12840886 tttgattagatcattatctatctgtagcatatataaacccaaatcattgttttgatgtaacctattttacttcccattttaccgtaagctaaaatgccat 12840787  T
177 tgttgct 183  Q
    |||||||    
12840786 tgttgct 12840780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 32060088 - 32060197
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
32060088 ggaaagcatccttgcaaacaaaagtatctaaatttatatcatacatgagatcattatttgattggatcattatctatttgtagcatatataaacccaaag 32060187  T
121 cattgttttt 130  Q
    ||||||||||    
32060188 cattgttttt 32060197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 32060211 - 32060277
Alignment:
115 ccaaagcattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttg 181  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
32060211 ccaaagcattgttttgatgtaacctattttacttcccattttatcgtaaactaaaatgtcattgttg 32060277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 27 - 337
Target Start/End: Complemental strand, 13694 - 13385
Alignment:
27 catcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaagcattgt 126  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
13694 catcattgcaaacaaatgtatctaaatttatatcatacatgagatcattatttgattagatcattatctatctttagcatatataaacccaaagcattgt 13595  T
127 ttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagttttatgcag 226  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
13594 tttgatgtaacatattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccaattagaattgagcagttttatgcag 13495  T
227 ttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttgaatttttatccattaattagactctgca 326  Q
    ||||||||||||||| ||||||||||||||||| |||||| || |||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||    
13494 ttccacaatttttcctaagagagacaaacaattcaaggagaatagaggttaggagtttttataatttgttttaattttt-tccattaattaaactctgca 13396  T
327 gaattttgact 337  Q
    |||||||||||    
13395 gaattttgact 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 335
Target Start/End: Original strand, 38979217 - 38979534
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    |||||||||||||| | ||| |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |||||||||||||||||    
38979217 ggaaagcatcattgtagacataggtatctaaatttatatcatacatgagatcattatttgattagataattatctatctataacatatataaacccaaag 38979316  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
38979317 cattgttttgatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaaacccacttagaattgagcagtttt 38979416  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttataatttgtttga---atttttatccattaatta 317  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    ||||| | |||||||||    
38979417 atgcggttccacagtttttcctaagagagacaaacaattgaaggagaatagaggttagaagtttttataatttgtttgatattttttttttcattaatta 38979516  T
318 gactctgcagaattttga 335  Q
     |||||||||||||||||    
38979517 aactctgcagaattttga 38979534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 20485 - 20220
Alignment:
21 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatagatgagatcattatttgattaaatcattatctatctgtagcatatataaacccaaag 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
20485 ggaaagcatcattgcaaacaaaggtatctaaatttatatcatacatgagatcattatttgattagatcattatcaatctgtagcatatataaacccaaag 20386  T
121 cattgtttttatgtaacctattttacttcccattttaccgtaaactaaaatgccattgttgctattaataaatcaatcccacttagaattgagcagtttt 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
20385 cattgttttgatgtaacctattttacttcccattttaccgtaaactaaaatgtcattgttgctattaataaatcaaatccacttagaattgagcagtttt 20286  T
221 atgcagttccacaatttttcccaagagagacaaacaattgaaggagcatcgaggttagaagtttttat 288  Q
    |||| |||||||||||||||| |  ||||||||||||||||| ||| || ||||||||||||||||||    
20285 atgcggttccacaatttttccta--agagacaaacaattgaatgagaatagaggttagaagtttttat 20220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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