View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_117 (Length: 348)

Name: NF11386A_low_117
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_117
NF11386A_low_117
[»] chr2 (5 HSPs)
chr2 (15-348)||(34562803-34563136)
chr2 (165-342)||(34571777-34571954)
chr2 (19-264)||(34579066-34579314)
chr2 (19-264)||(34584815-34585063)
chr2 (19-134)||(34571598-34571713)
[»] chr8 (10 HSPs)
chr8 (19-250)||(41943686-41943920)
chr8 (19-252)||(25865440-25865676)
chr8 (19-119)||(38799371-38799471)
chr8 (19-119)||(38822046-38822146)
chr8 (175-247)||(26591913-26591985)
chr8 (42-123)||(44343873-44343956)
chr8 (43-122)||(43479850-43479929)
chr8 (199-245)||(38799242-38799288)
chr8 (199-245)||(38822229-38822275)
chr8 (202-246)||(43480012-43480056)
[»] chr1 (3 HSPs)
chr1 (19-98)||(7594411-7594490)
chr1 (19-88)||(18492714-18492784)
chr1 (19-87)||(18471104-18471173)
[»] chr4 (1 HSPs)
chr4 (189-249)||(24860289-24860349)
[»] chr5 (4 HSPs)
chr5 (19-122)||(12531365-12531468)
chr5 (19-122)||(12547151-12547254)
chr5 (189-245)||(12531239-12531295)
chr5 (189-245)||(12547324-12547380)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 34562803 - 34563136
Alignment:
Q  15 aacatgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562803 aacatgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgtt 34562902  T
Q  115 ccaggacgaaaacgacgaggtctcttaagtccgccctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgg 214  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562903 ccaggacgaaaacgacgaggtctcttaagtcctccctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgg 34563002  T
Q  215 atttgcgagcagtttgctttgtacgcgccattgaatcgaagatagaagaaaactgctttggttttgaaagtgtcttgaaagnnnnnnnttgtaatgagaa 314  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  34563003 atttgcgagcagtttgctttgtacgcgccattgaatcaaaaatagaagaaaactgctttggttttgaaagtgtcttgaaagaaaaaaattgtaatgagaa 34563102  T
Q  315 tagtgaatgaaatgaaacatttatatagagatgg 348  Q
    ||||||||||||||||||||||||||||| ||||    
T  34563103 tagtgaatgaaatgaaacatttatatagaaatgg 34563136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 165 - 342
Target Start/End: Original strand, 34571777 - 34571954
Alignment:
Q  165 acgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatcgaagatagaagaa 264  Q
    |||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34571777 acgagcaacctttgtggcgagttccttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaatcgaaaatagaagaa 34571876  T
Q  265 aactgctttggttttgaaagtgtcttgaaagnnnnnnnttgtaatgagaatagtgaatgaaatgaaacatttatatag 342  Q
    |||||||||||||||||||||||||||||||       ||||||| ||||| ||||||||||||||| ||||||||||    
T  34571877 aactgctttggttttgaaagtgtcttgaaaggaaaaaattgtaataagaattgtgaatgaaatgaaagatttatatag 34571954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 34579066 - 34579314
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||    
T  34579066 tgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccag 34579165  T
Q  119 gacgaaaacgacgaggtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgga 215  Q
    ||||| ||||| ||||  |||| | ||||||     ||||   | | || ||||||  ||||||||||||   |||| |||||||||| |||  ||||||    
T  34579166 gacgataacgatgaggcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtgga 34579265  T
Q  216 tttgcgagcagtttgctttgtacgcgccattgaatcgaagatagaagaa 264  Q
    | ||||||||||||||||||||||||||||||||||||| | |||||||    
T  34579266 tctgcgagcagtttgctttgtacgcgccattgaatcgaaaaaagaagaa 34579314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 34584815 - 34585063
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||    
T  34584815 tgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccag 34584914  T
Q  119 gacgaaaacgacgaggtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgga 215  Q
    ||||| ||||| ||||  |||| | ||||||     ||||   | | || ||||||  ||||||||||||   |||| |||||||||| |||  ||||||    
T  34584915 gacgataacgatgaggcttcttgattccgccggttgttggcacagattttcgagcagcctttgtggcgagttgcttccttggtgccttaccaagggtgga 34585014  T
Q  216 tttgcgagcagtttgctttgtacgcgccattgaatcgaagatagaagaa 264  Q
    | ||||||||||||||||||||||||||||||||||||| | |||||||    
T  34585015 tctgcgagcagtttgctttgtacgcgccattgaatcgaaaaaagaagaa 34585063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 34571598 - 34571713
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || ||||||||||| |||||||||||||||||      
T  34571598 tgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcacgaagagcaactgttccgc 34571697  T
Q  119 gacgaaaacgacgagg 134  Q
     |||||||||| ||||    
T  34571698 aacgaaaacgatgagg 34571713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 41943920 - 41943686
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||| ||||| || ||||    
T  41943920 tgagcaatttcacgaacaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacggatctcacgaagtgcaacggtaccag 41943821  T
Q  119 gacgaaaacgacgaggtctcttaagtccgcccttt---ggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgga 215  Q
    ||||| | ||| ||||| |||| | ||| ||  ||   ||   | | || ||||||  ||| ||||| ||   |||| |||| |||||||||||||||||    
T  41943820 gacgatagcgatgaggtttcttgactccaccggttgtaggagcagatttgcgagcagccttggtggccagttgcttccttggagccttgccaccggtgga 41943721  T
Q  216 tttgcgagcagtttgctttgtacgcgccattgaat 250  Q
    |||||||||||||||||| ||||| ||||||||||    
T  41943720 tttgcgagcagtttgcttagtacgagccattgaat 41943686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 25865676 - 25865440
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| || ||||| ||||| ||||||||||| |||||||    
T  25865676 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttccag 25865577  T
Q  119 gacgaaaacgacgaggtctcttaagtccgcc---ctttggtttataattacgagcaatctttgtggcgagcaccttcgttggtgccttgccaccggtgga 215  Q
    ||||| ||||| ||||  |||| | ||||||     ||||   | | || |  |||   || || |||||   |||| ||||||||||||| ||||||||    
T  25865576 gacgataacgatgaggcttcttcactccgccggtggttggagcagatttccttgcagctttggtcgcgagttgcttccttggtgccttgccgccggtgga 25865477  T
Q  216 tttgcgagcagtttgctttgtacgcgccattgaatcg 252  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  25865476 tttgcgagcagtttgcttcgtacgagccattgaatcg 25865440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 38799471 - 38799371
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| | ||| || |  |||||||| || ||||| ||||| |  | |||||| |||||||    
T  38799471 tgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccag 38799372  T
Q  119 g 119  Q
    |    
T  38799371 g 38799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 38822046 - 38822146
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| | ||| || |  |||||||| || ||||| ||||| |  | |||||| |||||||    
T  38822046 tgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccag 38822145  T
Q  119 g 119  Q
    |    
T  38822146 g 38822146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 26591985 - 26591913
Alignment:
Q  175 tttgtggcgagcaccttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattg 247  Q
    ||||| ||||||  |||| ||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||    
T  26591985 tttgttgcgagctgcttccttggtgctttgccgccggtggacttgcgtgcagtttgcttagtacgtgccattg 26591913  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 123
Target Start/End: Complemental strand, 44343956 - 44343873
Alignment:
Q  42 ctggaatggaagcttacggatcaaaagatcggaactcttctggtatttac--gtatctcgcgaagagcaactgttccaggacga 123  Q
    |||||| |||||||||||||||||||| | || ||||||||| || ||||   | |||| ||||||||||| ||||||||||||    
T  44343956 ctggaagggaagcttacggatcaaaagtttggtactcttctgatacttacagatctctcacgaagagcaacggttccaggacga 44343873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 43479850 - 43479929
Alignment:
Q  43 tggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacg 122  Q
    |||||||||||||| | ||| | ||| |||| ||||||||| || || || ||||| ||||||||||| |||||||||||    
T  43479850 tggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacg 43479929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 38799288 - 38799242
Alignment:
Q  199 gccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 245  Q
    |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  38799288 gccttgccgccggtggatttgcgagctgtttgcttggtacgtgccat 38799242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 38822229 - 38822275
Alignment:
Q  199 gccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 245  Q
    |||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  38822229 gccttgccgccggtggatttgcgagctgtttgcttggtacgtgccat 38822275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 43480012 - 43480056
Alignment:
Q  202 ttgccaccggtggatttgcgagcagtttgctttgtacgcgccatt 246  Q
    ||||||||||||||||||||||| ||||| || ||||| ||||||    
T  43480012 ttgccaccggtggatttgcgagcggtttgtttggtacgagccatt 43480056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 7594411 - 7594490
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctc 98  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||||||||| ||||| |||||    
T  7594411 tgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 7594490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 18492784 - 18492714
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatc-ggaactcttctggtatt 88  Q
    |||| ||||||||||||||||| |||||||||||| |||||||| ||||  || || ||||||||||||||    
T  18492784 tgagaaatttcacgaacaagacactggaatggaagtttacggataaaaaattcaggtactcttctggtatt 18492714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 18471173 - 18471104
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatc-ggaactcttctggtat 87  Q
    |||| |||||||| |||||||| || ||||||||||||| |||||||||| || || |||||||||||||    
T  18471173 tgagaaatttcacaaacaagacactcgaatggaagcttatggatcaaaagttcaggtactcttctggtat 18471104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 24860349 - 24860289
Alignment:
Q  189 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaa 249  Q
    |||| ||||||| || || ||||||||||||||||| |||||||||||||| |||||||||    
T  24860349 cttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 24860289  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 12531468 - 12531365
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||| |||||||||||||| | ||||||||||||||| |  || | ||| ||||  ||||||||||| || || ||||| ||||| ||||| ||||| |    
T  12531468 tgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctg 12531369  T
Q  119 gacg 122  Q
    ||||    
T  12531368 gacg 12531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 12547151 - 12547254
Alignment:
Q  19 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 118  Q
    ||||| |||||||||||||| | ||||||||||||||| |  || | ||| ||||  ||||||||||| || || ||||| ||||| ||||| ||||| |    
T  12547151 tgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctg 12547250  T
Q  119 gacg 122  Q
    ||||    
T  12547251 gacg 12547254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 12531295 - 12531239
Alignment:
Q  189 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 245  Q
    |||| ||||||| || || ||||||||||||||||| |||||||| ||||| |||||    
T  12531295 cttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12531239  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12547324 - 12547380
Alignment:
Q  189 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccat 245  Q
    |||| ||||||| || || ||||||||||||||||| |||||||| ||||| |||||    
T  12547324 cttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12547380  T

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