View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_12 (Length: 490)
Name: NF11386A_low_12
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 52477111 - 52477268
Alignment:
| Q |
1 |
cagaaaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatg |
100 |
Q |
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| T |
52477111 |
cagaaaaccctaatattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatg |
52477210 |
T |
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| Q |
101 |
gattgtggactgagtgagttagaatctgagcaattgtagcaccgattggaactattgg |
158 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
52477211 |
gattgtggactgagtgagttggaaactgagcaattgtagcaccgattggaactattgg |
52477268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 2302006 - 2302135
Alignment:
| Q |
5 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2302006 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
2302105 |
T |
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| Q |
105 |
gtggactgagtgagttagaatctgagcaat |
134 |
Q |
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| T |
2302106 |
gtggactgagtgagttggaatctgagcaat |
2302135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 52477243 - 52477366
Alignment:
| Q |
204 |
attgtagcaccaattggaactattggaccgattgtgagaagctaggtttggaagtgacaagaatctgaatcgagtgtgtacgctaggttgggagtgtgag |
303 |
Q |
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| T |
52477243 |
attgtagcaccgattggaactattggaccgattgtgagaagctaggtttggaagtgacaagaatatgaatcgagtgtgtaggctaggttgggagtgtgag |
52477342 |
T |
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| Q |
304 |
agcgagagcgtgtgaagtcataac |
327 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
52477343 |
agcgagagcgtgtgaagccataac |
52477366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 421 - 472
Target Start/End: Original strand, 52477492 - 52477543
Alignment:
| Q |
421 |
ttgagattggtgagtgagtgagtttgagattttagggttttggaggtgttgg |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477492 |
ttgagattggtgagtgagtgagtttgagattttagggttttggaggtgttgg |
52477543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 40067176 - 40067019
Alignment:
| Q |
1 |
cagaaaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatg |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40067176 |
cagaaaaccctaatattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtgattcactaaccttttagggcaataaaatcaacggtgatg |
40067077 |
T |
|
| Q |
101 |
gattgtggactgagtgagttagaatctgagcaattgtagcaccgattggaactattgg |
158 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
40067076 |
gattgtggactgagtgagttggaaactgagcaattgtagcaccgattggaactattgg |
40067019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 27513170 - 27513285
Alignment:
| Q |
19 |
taaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggattgtggactgagtgag |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| |
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| T |
27513170 |
taaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaattaatggtgatggattgaggactgagtgag |
27513269 |
T |
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| Q |
119 |
ttagaatctgagcaat |
134 |
Q |
| |
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|| ||||||||||||| |
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| T |
27513270 |
ttggaatctgagcaat |
27513285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 40067044 - 40066990
Alignment:
| Q |
204 |
attgtagcaccaattggaactattggaccgattgtgagaagctaggtttggaagt |
258 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40067044 |
attgtagcaccgattggaactattggaccgattgtgagaagctaggtttggaagt |
40066990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 15328561 - 15328432
Alignment:
| Q |
5 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
15328561 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaatcaatggtgatggatt |
15328462 |
T |
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| Q |
105 |
gtggactgagtgagttagaatctgagcaat |
134 |
Q |
| |
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| |||||||||||||| ||||||||||||| |
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| T |
15328461 |
ggggactgagtgagttggaatctgagcaat |
15328432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 15508930 - 15508801
Alignment:
| Q |
5 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgatggatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
15508930 |
aaaccctaaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtaattcactaacctttcagagcaataaaatcaatggtgatggatt |
15508831 |
T |
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| Q |
105 |
gtggactgagtgagttagaatctgagcaat |
134 |
Q |
| |
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| |||||||||||||| ||||||||||||| |
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| T |
15508830 |
ggggactgagtgagttggaatctgagcaat |
15508801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 1390859 - 1390771
Alignment:
| Q |
11 |
taaaattttaaatcacaaattagcagcaataaaatcaagttagcaaaggtgattcactaaccttttagagcaataaaatcaacggtgat |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||| |||||| |
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| T |
1390859 |
taaaattttaaatcacaaattagcagcaataaaatcaatttagcaaaggtggttcactaacctttcagagtaataaaaccaaaggtgat |
1390771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 1390732 - 1390651
Alignment:
| Q |
248 |
ggtttggaagtgacaagaatctgaatc--gagtgtgtacgctaggttgggagtgtgagagcgagagcgtgtgaagtcataac |
327 |
Q |
| |
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||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||||||| | |||||||| |||||| |
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| T |
1390732 |
ggtttgggagtgagaagaatctgaatcaagagtgtgtaggttaggttgggagtgtgagagcgagtgtgtgtgaaggcataac |
1390651 |
T |
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