View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_122 (Length: 343)
Name: NF11386A_low_122
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_122 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 67 - 342
Target Start/End: Complemental strand, 33040932 - 33040657
Alignment:
| Q |
67 |
cgtacatggctaagttgtggggtgctctgaaaatccaaatgcaactctacatgagacaatcctcttgctttgttaagcatcaagccttaaaaaccacccc |
166 |
Q |
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| T |
33040932 |
cgtacatggctaagttgtggggtgctctgaaaatccaaatgcaactctacatgagacaatcctcttactttattaagcatcaagccttaaaaaccacccc |
33040833 |
T |
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| Q |
167 |
acacattagccatgtacgcacatgtcccacaacacgattttgcaaaaccacaacgaccatcttctttttaaatgaaggagtctatgggcatttgaaacaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33040832 |
acacattagccatgtacgcacatgtcccacaacacgattttgcaaaaccacaacgaccatcttctttttaaatgaaggagtctatgggcatttgaaacaa |
33040733 |
T |
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| Q |
267 |
gctaccattcttaaccataccacgatcatacttaccgttcaaaacattacctcaaagtttatctttgctactacac |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33040732 |
gctaccattcttaaccataccacgatcatacttaccgttcaaaacattacctcaaagtttatccttgctactacac |
33040657 |
T |
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