View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_128 (Length: 339)

Name: NF11386A_low_128
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_128
NF11386A_low_128
[»] chr3 (10 HSPs)
chr3 (7-339)||(5484450-5484780)
chr3 (189-339)||(5525676-5525824)
chr3 (282-339)||(5828253-5828310)
chr3 (131-195)||(5525588-5525652)
chr3 (247-339)||(5490083-5490174)
chr3 (9-69)||(5525497-5525557)
chr3 (249-339)||(5454907-5454997)
chr3 (251-339)||(20343528-20343617)
chr3 (247-339)||(5446346-5446438)
chr3 (7-75)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (247-339)||(25809374-25809466)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 339
Target Start/End: Original strand, 5484450 - 5484780
Alignment:
Q  7 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaaggaaaaaagatctatagggaaaagtgaaaaga 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5484450 caagtttctcgtattctttatatgatctgtaggttgaagtaaatgtcattcaagaagcagataaagaaggaaaaaagatctacagggaaaagtgaaaaga 5484549  T
Q  107 gaattattaatgccgcgtaattttatgtttttaacagtacaaaattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 206  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484550 gaattattaatgccacgtaattttatgtttttaacagtacataattcctagagattgattatttccagaagttggcatttatatgttttgtaatcttttc 5484649  T
Q  207 ctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatgtgtgcaatatatctgactgaagagataaaatatgt 306  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  5484650 ctattaattaaacagttaaggtatcagtaccag--ctatcacacaaatgatgaaataaataaatttgtgctatatatctgactgaagagataaaatatgt 5484747  T
Q  307 ctttggaattgaaaataccaagttctgaagatg 339  Q
    |||||||| ||||||||||||||||||||||||    
T  5484748 ctttggaaatgaaaataccaagttctgaagatg 5484780  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 5525676 - 5525824
Alignment:
Q  189 atgttttgtaatcttttcctattaattaaacagttaaggtatcagtaccagttctatcacacaaatgatgaaataaataaatgtgtgcaatatatctgac 288  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||  ||||| |||||||| ||    
T  5525676 atgttttgtaatctattcctattaattaaactgttaaggtagcagtgccagttctatcacacaaatgatgaaatatataaa--tgtgctatatatctaac 5525773  T
Q  289 tgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    |||| ||  |||||||||  | |||| | ||||||||||||||||||||||    
T  5525774 tgaaaaggaaaaatatgtgataggaagttaaaataccaagttctgaagatg 5525824  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 5828310 - 5828253
Alignment:
Q  282 atctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  5828310 atctaactgaagaggtaaaatatgtctttggaaatgaaaataccaagttcggaagatg 5828253  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 5525588 - 5525652
Alignment:
Q  131 atgtttttaacagtacaaaattcctagagattgattatttccagaagttggcatttatatgtttt 195  Q
    ||||||| ||| ||||  ||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  5525588 atgttttgaacggtactcaattcctagaggttgattattttcagaagttggcatttatgtgtttt 5525652  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 5490083 - 5490174
Alignment:
Q  247 acacaaatgatgaaataaataaatgtgtgcaatatatctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    ||||||||| |||||||  ||||| | ||| |||||||| |||||| ||| |||||||||  |  ||| ||||||||||||||||||||||||    
T  5490083 acacaaatggtgaaatat-taaatttatgctatatatctaactgaaaagacaaaatatgtaataagaaatgaaaataccaagttctgaagatg 5490174  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5525497 - 5525557
Alignment:
Q  9 agtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagata 69  Q
    |||| ||| |||||||| |||||||||  | |||||||||||||||||||| |||||||||    
T  5525497 agttcctcttattctttttatgatctgatggttgaagtaaatgtcagtcaacaagcagata 5525557  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 339
Target Start/End: Original strand, 5454907 - 5454997
Alignment:
Q  249 acaaatgatgaaataaataaatgtgtgcaatatatctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    ||||||| ||||||| |||| | | ||| |||||||| |||||| ||| |||||||||  |  |||  |||||||||||||||||||||||    
T  5454907 acaaatggtgaaatatataagtttatgctatatatctaactgaaaagacaaaatatgtaataagaaaagaaaataccaagttctgaagatg 5454997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 20343528 - 20343617
Alignment:
Q  251 aaatgatgaaataaat-aaatgtgtgcaatatatctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    ||||| ||||||| || |||| |||||||||||||| |||| | ||  |||| ||||  | |||| ||||||||||||||||||||||||    
T  20343528 aaatgctgaaatatatgaaatttgtgcaatatatctaactggaaaggaaaaagatgtaataggaaatgaaaataccaagttctgaagatg 20343617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 339
Target Start/End: Original strand, 5446346 - 5446438
Alignment:
Q  247 acacaaatgatgaaataaataaatgtgtgcaatatatctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    ||||||||| |||||||  ||||| | ||| |||||||| ||||||  || |||||||||  |   || ||||||||||||||||||||||||    
T  5446346 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatg 5446438  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 20343322 - 20343390
Alignment:
Q  7 caagtttctcgtattctttatatgatctgtagtttgaagtaaatgtcagtcaagaagcagataaagaag 75  Q
    |||||| ||| |||||||| |||||||||  | ||||| |||||||||||||| |||||| || |||||    
T  20343322 caagttcctcttattctttttatgatctgagggttgaaataaatgtcagtcaacaagcaggtatagaag 20343390  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 25809466 - 25809374
Alignment:
Q  247 acacaaatgatgaaataaataaatgtgtgcaatatatctgactgaagagataaaatatgtctttggaattgaaaataccaagttctgaagatg 339  Q
    ||||||||| |||||||  ||||| | ||| |||||||| ||||||  || |||||||||  |   || ||||||||||||||||||||||||    
T  25809466 acacaaatggtgaaatatgtaaatttatgctatatatctaactgaaaggacaaaatatgtaataacaaatgaaaataccaagttctgaagatg 25809374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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