View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_13 (Length: 490)
Name: NF11386A_low_13
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 4 - 420
Target Start/End: Original strand, 25616698 - 25617114
Alignment:
| Q |
4 |
cgcgggctggtacagttcggaatcaaagcagttcagattgggagaggcctaattatggcttgctcaaatgtaatgtggatgcggcatttaacgaaagagc |
103 |
Q |
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| T |
25616698 |
cgcgggctggtacagttcggaatcaaagcagttcagattaggagaggcctaattatggcttgctcaaacgtaacgtggatgcagcatttaaccgaagagc |
25616797 |
T |
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| Q |
104 |
cggtattacatccattgagtgctgtgtacgaaataacaatggagaatttgtgatgtcacaaacaagttggaaacaagcgaacttatcaatcctcgaaggc |
203 |
Q |
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| T |
25616798 |
tggtattacattcattgggtgctgtgtacgaaataacaatgaagaatttgtgatgttacaaacaagttggaaacaagcgaacttatcaatcctcgaatgc |
25616897 |
T |
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| Q |
204 |
gaagctacttcactattagaaggactgcatatggctattgttaagggatgggagaatgtgattttagagagtatgattcactaatcttagtagactctat |
303 |
Q |
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| T |
25616898 |
gaagctacttcactattagaaggactgcatatggctattgttaagggatgggagaatgtgatttttgagagtatgattcactaatcttagtagactctat |
25616997 |
T |
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| Q |
304 |
ttagctcccatgttggaggtgagtctaaattttgtctataagattcagatgcacagctaaaagaattctccttttaatattaacctgtaaaataaagtgt |
403 |
Q |
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| T |
25616998 |
ttagctcccatgttggaggtgagtctaaattttgtctataagattcagatgcacagctaaaagaattctccttttaatattaacctgtaaaataaagtgt |
25617097 |
T |
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| Q |
404 |
attagctctatatgtac |
420 |
Q |
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| T |
25617098 |
attagctctatatgtac |
25617114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 412 - 490
Target Start/End: Complemental strand, 25614913 - 25614835
Alignment:
| Q |
412 |
tatatgtacattaaactcatagataacacaagaaaaccacgcattgtactccaagataacacaacaaaatggatcatca |
490 |
Q |
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| T |
25614913 |
tatatgcacattaaactcatagataacacaagaaaaccacgcattgtactccaagataacacaacaaaatggatcatca |
25614835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 25611738 - 25611682
Alignment:
| Q |
365 |
agaattctccttttaatatta-acctgtaaaataaagtgtattagctctatatgtac |
420 |
Q |
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| T |
25611738 |
agaattctccttttaatattttacctgtagaataaagtgtattagctctatatgtac |
25611682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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