View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_14 (Length: 487)
Name: NF11386A_low_14
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 6915464 - 6915945
Alignment:
| Q |
6 |
ctttcgagttggagcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactgg |
105 |
Q |
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| T |
6915464 |
ctttcaagttggagcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactgg |
6915563 |
T |
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| Q |
106 |
aaagaaaattaaggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgtt |
205 |
Q |
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| T |
6915564 |
aaagaaaattaaggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgtt |
6915663 |
T |
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| Q |
206 |
gattgtgcatccggcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccag |
305 |
Q |
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| T |
6915664 |
gattgtgcatccagcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccag |
6915763 |
T |
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| Q |
306 |
tctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccacagggaggatcctactttccgtgttagcttgggcccagagagtgggcaaac |
405 |
Q |
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| T |
6915764 |
tctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccaaagagaggatcctacttttcgtgttagcttggacccagagagtgggcaaac |
6915863 |
T |
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| Q |
406 |
aatcatttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggtgttgatgctacagtt |
487 |
Q |
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| T |
6915864 |
aatcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagtt |
6915945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 15040345 - 15040241
Alignment:
| Q |
221 |
gatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattagctgtacagccagtctcaaaagattctg |
320 |
Q |
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| T |
15040345 |
gatacttttactgatgggtctgttaaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattagctgtacagccagtctcaaaagattctg |
15040246 |
T |
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| Q |
321 |
gaggg |
325 |
Q |
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| T |
15040245 |
gaggg |
15040241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 15040137 - 15040064
Alignment:
| Q |
329 |
ttttcaaaagctttgaaccgcttccacagggaggatcctactttccgtgttagcttgggcccagagagtgggca |
402 |
Q |
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| T |
15040137 |
ttttcaaaagctttgaaccgcttccaaagagaggatcctactttccgtgttggcttggacccagagagtgggca |
15040064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
161 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
216 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
49 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
111 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 458
Target Start/End: Complemental strand, 15039977 - 15039923
Alignment:
| Q |
404 |
acaatcatttctggaatgggagaactacacttagatatttatgttaaatgcatta |
458 |
Q |
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| T |
15039977 |
acaattatttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
| Q |
167 |
gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatttactgatgggtcggtta |
245 |
Q |
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| T |
35856854 |
gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 43895598 - 43895529
Alignment:
| Q |
305 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccacagggaggatcctactttcc |
374 |
Q |
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| T |
43895598 |
gtctcaaaagattctggagggcaattttcaactgctttgaatggttttcaaagaaaggatcctactttcc |
43895529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 44306022 - 44305953
Alignment:
| Q |
305 |
gtctcaaaagattctggagggaaattttcaaaagctttgaaccgcttccacagggaggatcctactttcc |
374 |
Q |
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| T |
44306022 |
gtctcaaaagattctggagggcaattttcaagtgctttgaatggttttcaaagaaaggatcctactttcc |
44305953 |
T |
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