View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_144 (Length: 330)
Name: NF11386A_low_144
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_144 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 18982196 - 18981864
Alignment:
| Q |
1 |
tcaggattttgtaacccggacattggcgagaaaagtagctaccaagggaagaggcagcggtccaattccggtaccaaagctaaagaagaggg-agcacaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18982196 |
tcaggattttgtaacccggacattggcgagaaaagtagctaccaagggaagaggcagtggtccaattccggtaccaaagctaaagaagaggggagcacaa |
18982097 |
T |
|
| Q |
100 |
tacaaactccaaaacaagctactaaagtggtatagataagacgcctcaattcaatgttttatgaatcaacatgatataataaattgattttgtcacatta |
199 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18982096 |
tacaaactccaaaacaagctacttaagtggtatagataagaggcctcaattcaatgtttgatgaatcaacatgatataataaattgattttgtcacctta |
18981997 |
T |
|
| Q |
200 |
acactctaattaa-------------agtggaggtttaagttagaaaccaacaaaagaagataagaaaagattataaattcgtattgctttttgcctata |
286 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18981996 |
acactctaattaaaattttattttagagtggaggtttaagttagaaaccaacaaaagaagataagaaaagattataaattcgtattgcttttttcctata |
18981897 |
T |
|
| Q |
287 |
ataatgtaaaatcattaagataattgtaaataa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18981896 |
ataatgtaaaatcattaagataattgtaaataa |
18981864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University