View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_145 (Length: 329)
Name: NF11386A_low_145
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_145 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 5852232 - 5851933
Alignment:
| Q |
18 |
catcgctctgatttccccttgaacgcactgtgatgcttgttcaacccttgaatggtcggtagaattatatgttttgagttcacttagacatttaactgaa |
117 |
Q |
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|||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||| |
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| T |
5852232 |
catcactctgattgccccttgaacccactatgatgcttgttcaacccttgaatggtcggtagaatcacatgtgttgagttcacttggacatttaactgaa |
5852133 |
T |
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| Q |
118 |
agatatgttgaggtgacaaattatccaatgaaaactgaaagagtctctaatcttatacaacgtatgcgctccctcttatccgttcgactgtgctacactt |
217 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5852132 |
agatatgttgaggtgacaaatgatccaatgaaaactgaaagagtctctaatcttatacaacgtatgcgctccctcttatccgttcgagtgtgctacactt |
5852033 |
T |
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| Q |
218 |
tcatgtattataggccgtttagttggtattaagaacatggttggcatccctcacttcgaaaatgatgcacgaaccaatcgacttaataggacaatgaaag |
317 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
5852032 |
tcatgtatgataggccgtttagttggtattaagaacatggttggcatccctcacttcgaaaatgatgcaagaaccaatcgacttaataggtaaatgaaag |
5851933 |
T |
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