View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_158 (Length: 317)
Name: NF11386A_low_158
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_158 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 49165697 - 49165389
Alignment:
| Q |
1 |
gatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagttt |
100 |
Q |
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| T |
49165697 |
gatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagcctgcagtgagttt |
49165598 |
T |
|
| Q |
101 |
ctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgcannnnnn |
200 |
Q |
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| T |
49165597 |
ctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgca--tttt |
49165500 |
T |
|
| Q |
201 |
nnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtg |
300 |
Q |
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| T |
49165499 |
tttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtg |
49165400 |
T |
|
| Q |
301 |
tatggtagaac |
311 |
Q |
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||||||||||| |
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| T |
49165399 |
tatggtagaac |
49165389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 43752102 - 43751932
Alignment:
| Q |
1 |
gatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagttt |
100 |
Q |
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||||||||||| ||| |||| || |||||||| |||||||| | |||||||||| |||||||| ||||||| ||||||| |||| || ||||| | |
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| T |
43752102 |
gatagtgaaatgtggatttttcagagtggatgcgaattgatctgattctttcttaacttcagaacttttgaaagagcatgaactagcatggagtgaat-- |
43752005 |
T |
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| Q |
101 |
ctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctattt |
174 |
Q |
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|||||||| ||||| ||||| ||||||||||||||| | | || |||||||||||||||||| ||||||| |
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| T |
43752004 |
-tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaatttacaaataagctacatctattt |
43751932 |
T |
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