View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_161 (Length: 315)

Name: NF11386A_low_161
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_161
NF11386A_low_161
[»] chr2 (11 HSPs)
chr2 (74-301)||(5851744-5851968)
chr2 (243-309)||(5711729-5711792)
chr2 (243-309)||(37840304-37840367)
chr2 (243-300)||(14466473-14466527)
chr2 (242-307)||(32356352-32356414)
chr2 (243-299)||(2029736-2029789)
chr2 (243-299)||(2029971-2030024)
chr2 (243-307)||(4662198-4662259)
chr2 (243-307)||(37812554-37812615)
chr2 (243-302)||(14466236-14466292)
chr2 (243-301)||(37812330-37812385)
[»] chr7 (8 HSPs)
chr7 (243-306)||(18826545-18826605)
chr7 (243-307)||(29469572-29469633)
chr7 (243-307)||(29469807-29469868)
chr7 (242-307)||(1596560-1596622)
chr7 (243-307)||(1596795-1596856)
chr7 (243-307)||(21861261-21861322)
chr7 (243-307)||(21861496-21861557)
chr7 (243-307)||(43688215-43688276)
[»] chr5 (8 HSPs)
chr5 (241-307)||(41667049-41667112)
chr5 (243-307)||(24346557-24346618)
chr5 (243-307)||(41666813-41666874)
chr5 (242-307)||(25258357-25258419)
chr5 (242-307)||(25322147-25322209)
chr5 (243-302)||(8081175-8081231)
chr5 (279-307)||(17352724-17352752)
chr5 (243-301)||(24269932-24269987)
[»] chr1 (3 HSPs)
chr1 (243-309)||(4112594-4112657)
chr1 (243-307)||(26177110-26177171)
chr1 (243-302)||(8870971-8871032)
[»] scaffold0519 (1 HSPs)
scaffold0519 (243-307)||(2118-2179)
[»] chr8 (4 HSPs)
chr8 (243-307)||(11232250-11232311)
chr8 (243-307)||(35682837-35682898)
chr8 (243-309)||(15042724-15042787)
chr8 (243-309)||(24532475-24532538)
[»] chr6 (5 HSPs)
chr6 (243-307)||(4868633-4868694)
chr6 (243-307)||(9705221-9705282)
chr6 (243-307)||(13353168-13353229)
chr6 (243-307)||(33796293-33796354)
chr6 (243-307)||(17147716-17147777)
[»] chr4 (8 HSPs)
chr4 (243-307)||(35796798-35796859)
chr4 (238-307)||(35797033-35797099)
chr4 (243-307)||(27634137-27634198)
chr4 (245-309)||(35175004-35175065)
chr4 (243-307)||(39902619-39902680)
chr4 (241-309)||(52559532-52559597)
chr4 (245-307)||(37836049-37836108)
chr4 (243-301)||(40717268-40717323)
[»] chr3 (2 HSPs)
chr3 (243-301)||(31317433-31317488)
chr3 (243-307)||(16927005-16927066)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 74 - 301
Target Start/End: Complemental strand, 5851968 - 5851744
Alignment:
Q  74 atgcaagaaccaatcgacttaataggtaaatgaaagagacattgtgcggtgcagttgaattgcttgacaaatactttttcatagaacgagtggctaatca 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||||||    
T  5851968 atgcaagaaccaatcgacttaataggtaaatgaaagagacattgtgcggtgcagttgaattgcttgacacatactttttcatag---gagtggctaatca 5851872  T
Q  174 ccactgcatgaaagacttcatgttaccattctacatctctctacttctactttgagtattgcttgataatgttaagagtcccacattggacaggacatga 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||     
T  5851871 ccactgcatgaaagacttcatgttaccattctacatctctctacttctactttgaatattgcttgatactgttaagagtcccacatcggacaggacatgg 5851772  T
Q  274 catgttaacaatgtgtttataagtgggg 301  Q
    | || | ||||||| |||||||||||||    
T  5851771 cctgctgacaatgtatttataagtgggg 5851744  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 5711792 - 5711729
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||||    
T  5711792 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatcat 5711729  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 37840304 - 37840367
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||||||||| |||| ||||| ||   ||||||||||||||||||| || ||||||    
T  37840304 tgttaagagtcccacattggataggagatgacctg---acaatgtgtttataagtggaggcaatcat 37840367  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 14466527 - 14466473
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtggg 300  Q
    ||||||||||||||||| |||||||||||| | ||   ||||||||||||||||||||    
T  14466527 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtggg 14466473  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 32356352 - 32356414
Alignment:
Q  242 atgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||||| ||||| ||||| || ||||||||   |||||||||||||||||||||| ||||    
T  32356352 atgttaagagtctcacatcggacatgagatgacatg---acaatgtgtttataagtgggggcaatc 32356414  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 2029736 - 2029789
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgg 299  Q
    ||||||||||||||||| ||| |||||||||| ||   |||||||||||||||||||    
T  2029736 tgttaagagtcccacatcggataggacatgacctg---acaatgtgtttataagtgg 2029789  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 2029971 - 2030024
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgg 299  Q
    ||||||||||||||||| ||||| |||||||| ||   |||||||||||||||||||    
T  2029971 tgttaagagtcccacatcggacatgacatgacctg---acaatgtgtttataagtgg 2030024  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 4662198 - 4662259
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||||| ||   ||||| |||||||||||||||| ||||    
T  4662198 tgttaagagtcccacatcggataggacatgacctg---acaatatgtttataagtgggggcaatc 4662259  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 37812615 - 37812554
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| | |||||||| ||   |||||||||||||||||||||| ||||    
T  37812615 tgttaagagtcccacatcggataagacatgacctg---acaatgtgtttataagtgggggcaatc 37812554  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 14466292 - 14466236
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtggggg 302  Q
    |||||||||| |||||| |||||||||||| |    ||||||||||||||||||||||||    
T  14466292 tgttaagagttccacatcggacaggacatggc---ctaacaatgtgtttataagtggggg 14466236  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 37812385 - 37812330
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggg 301  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||    
T  37812385 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggg 37812330  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 18826605 - 18826545
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaat 306  Q
    ||||||||||||||||||||| |||| ||||| ||   ||||||||||||||||||||||||||    
T  18826605 tgttaagagtcccacattggataggagatgacctg---acaatgtgtttataagtgggggtaat 18826545  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 29469572 - 29469633
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  29469572 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 29469633  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 29469807 - 29469868
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  29469807 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 29469868  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 1596560 - 1596622
Alignment:
Q  242 atgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||||||||||| |||||||||||| | ||   |||||||||| ||||||||||| ||||    
T  1596560 atgttaagagtcccacatcggacaggacatggcctg---acaatgtgttaataagtgggggcaatc 1596622  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 1596795 - 1596856
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| ||||    
T  1596795 tgttaagagtcccacatcggacaggacatggc---ctaacaatgtttttataagtgggggcaatc 1596856  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21861261 - 21861322
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||| ||| ||||    
T  21861261 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgagggcaatc 21861322  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 21861496 - 21861557
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||| |||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  21861496 tgttaagagttccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 21861557  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 43688276 - 43688215
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||| ||||    
T  43688276 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggggcaatc 43688215  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 41667112 - 41667049
Alignment:
Q  241 aatgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  41667112 aatgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 41667049  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 24346618 - 24346557
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||||||||    
T  24346618 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggggtaatc 24346557  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 41666874 - 41666813
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  41666874 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 41666813  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 25258419 - 25258357
Alignment:
Q  242 atgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||||||||||||||||| |    ||||||| ||||||| |||||||| ||||    
T  25258419 atgttaagagtcccacattggacaggacatggc---ctaacaatatgtttatcagtgggggcaatc 25258357  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 25322209 - 25322147
Alignment:
Q  242 atgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||||||||||||||||| |    ||||||| ||||||| |||||||| ||||    
T  25322209 atgttaagagtcccacattggacaggacatggc---ctaacaatatgtttatcagtgggggcaatc 25322147  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 8081231 - 8081175
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtggggg 302  Q
    ||||||||||||||||| ||| |||||||| | ||   ||||||||||||||||||||||    
T  8081231 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtggggg 8081175  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 17352752 - 17352724
Alignment:
Q  279 taacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||||||||||||||||||||||    
T  17352752 taacaatgtgtttataagtgggggtaatc 17352724  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 24269987 - 24269932
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggg 301  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||    
T  24269987 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggg 24269932  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 4112657 - 4112594
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||||| |||||||||||| ||||   ||||||||||||||||| |||| ||||||    
T  4112657 tgttaagagtcccacatcggacaggacatggcatg---acaatgtgtttataagtaggggcaatcat 4112594  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 26177110 - 26177171
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||||| ||   |||| ||||||||||||||||| ||||    
T  26177110 tgttaagagtcccacatcggacaggacatgacctg---acaacgtgtttataagtgggggcaatc 26177171  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 8871032 - 8870971
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatg--ttaacaatgtgtttataagtggggg 302  Q
    ||||||||||||||||| ||||| |||||||||||   | ||||||||||||||||| ||||    
T  8871032 tgttaagagtcccacatcggacatgacatgacatgatctgacaatgtgtttataagttgggg 8870971  T

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Target: scaffold0519 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 2118 - 2179
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  2118 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 2179  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 11232311 - 11232250
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  11232311 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 11232250  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 35682898 - 35682837
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||| |||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  35682898 tgttaagagttccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 35682837  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 15042787 - 15042724
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||||| ||| | |||||| | ||   |||||||||||||||||||||| ||||||    
T  15042787 tgttaagagtcccacatcggatacgacatggcctg---acaatgtgtttataagtgggggcaatcat 15042724  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 24532538 - 24532475
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||||| ||| |||| ||| | ||   |||||||||||||||||||||| ||||||    
T  24532538 tgttaagagtcccacatcggataggagatggcctg---acaatgtgtttataagtgggggcaatcat 24532475  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 4868694 - 4868633
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  4868694 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 4868633  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 9705221 - 9705282
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||| |   ||||||||||||||||||||||||| ||||    
T  9705221 tgttaagagtcccacatcggataggacatggc---ttaacaatgtgtttataagtgggggcaatc 9705282  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 13353168 - 13353229
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  13353168 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 13353229  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 33796293 - 33796354
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| |||||||||||| | ||   |||||||||||||||||||||| ||||    
T  33796293 tgttaagagtcccacatcggacaggacatggcctg---acaatgtgtttataagtgggggcaatc 33796354  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 17147777 - 17147716
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||||| ||   ||||||| |||||||||||||| ||||    
T  17147777 tgttaagagtcccacatcggataggacatgacctg---acaatgtatttataagtgggggcaatc 17147716  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 35796859 - 35796798
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||||||||| |||||| |||||||||||| ||||   |||||||||||||||||||||| ||||    
T  35796859 tgttaagagttccacatcggacaggacatggcatg---acaatgtgtttataagtgggggcaatc 35796798  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 35797099 - 35797033
Alignment:
Q  238 gataatgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    |||| |||||||||||||| || |||||||| ||||||||   ||||| |||||||||||||||| ||||    
T  35797099 gatagtgttaagagtcccatatcggacaggagatgacatg---acaatatgtttataagtgggggcaatc 35797033  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 27634198 - 27634137
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||| ||||    
T  27634198 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggggcaatc 27634137  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 35175004 - 35175065
Alignment:
Q  245 ttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    ||||||||||||||| |||||| ||||| | ||   |||||||||||||||| ||||||||||||    
T  35175004 ttaagagtcccacatcggacagaacatggcctg---acaatgtgtttataagagggggtaatcat 35175065  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 39902680 - 39902619
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| |||||||| | ||   |||||||||||||||||||||| ||||    
T  39902680 tgttaagagtcccacatcggataggacatggcctg---acaatgtgtttataagtgggggcaatc 39902619  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 52559532 - 52559597
Alignment:
Q  241 aatgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatcat 309  Q
    |||||||| |||| ||||||||| | |||||||| ||   |||||||||||||||||||||| ||||||    
T  52559532 aatgttaaaagtctcacattggatatgacatgacctg---acaatgtgtttataagtgggggcaatcat 52559597  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 37836049 - 37836108
Alignment:
Q  245 ttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||| |||||||||||| |    ||||||||| |||||||||||||| ||||    
T  37836049 ttaagagtcccacatcggacaggacatggc---ctaacaatgtatttataagtgggggcaatc 37836108  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 40717323 - 40717268
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggg 301  Q
    |||||||||||||||||  ||||| ||||||| ||   |||||||||||||||||||||    
T  40717323 tgttaagagtcccacatcagacagaacatgacctg---acaatgtgtttataagtgggg 40717268  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 31317433 - 31317488
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggg 301  Q
    |||||||||||| |||| ||| |||||||||||||   |||||||||||||||||||||    
T  31317433 tgttaagagtcctacatcggataggacatgacatg---acaatgtgtttataagtgggg 31317488  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 16927066 - 16927005
Alignment:
Q  243 tgttaagagtcccacattggacaggacatgacatgttaacaatgtgtttataagtgggggtaatc 307  Q
    ||||||||||||||||| ||| || ||||| | ||   |||||||||||||||||||||||||||    
T  16927066 tgttaagagtcccacatcggatagaacatggcctg---acaatgtgtttataagtgggggtaatc 16927005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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