View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_165 (Length: 313)

Name: NF11386A_low_165
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_165
NF11386A_low_165
[»] chr7 (2 HSPs)
chr7 (139-281)||(28518947-28519089)
chr7 (6-56)||(28518816-28518866)
[»] chr8 (2 HSPs)
chr8 (148-238)||(12728863-12728953)
chr8 (148-240)||(34291144-34291236)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 28518947 - 28519089
Alignment:
Q  139 tagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28518947 tagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct 28519046  T
Q  239 ggtgtgtataattttttctctagcttaaaatttgtagatattg 281  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28519047 ggtgtgtataattttttctctagcttaaaatttgtagatattg 28519089  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
Q  6 atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28518816 atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta 28518866  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
Q  148 tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct 238  Q
    |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || || ||||||| ||| |||||||||    
T  12728953 tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct 12728863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
Q  148 tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatctgg 240  Q
    |||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || |||||||  || |||||||||||    
T  34291144 tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg 34291236  T

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