View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_17 (Length: 475)
Name: NF11386A_low_17
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 20 - 412
Target Start/End: Complemental strand, 2582672 - 2582276
Alignment:
| Q |
20 |
tgatggtgtcgacttaggattttggagtatattcttcctcgaggtttcagatttaattttgtatggtgtcaatttaaataggttaatttagtttcgtnnn |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
2582672 |
tgatggtgtcgacttaggatcttggagtatgttcttcctcgagatttcagatttgattttgtatggtgtcaatttaaataagctaatttagtttcgtaaa |
2582573 |
T |
|
| Q |
120 |
nnnnnn--ttctacaacactcactttgctgcatcaagttcctcgaatgcgttggaaaattaggctataaattcattaactcatggaaccttctctatgac |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582572 |
aagaaaatttctacaatactcactttgctgcatcaagttcctcgaatgcgttggaaaattaggctataaattcattaactcatggaaccttctctatgac |
2582473 |
T |
|
| Q |
218 |
actcccataatctcttttgagattctccaagtgtcttggaatacaaaa--tcgagattaactgtatgcacatagagagggtattttaagtatattaatgc |
315 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582472 |
actcccataatctcttttgagattctctaagtgtcttggaatacaaaaaatcgagattaactgtatgcacatagagagggtattttaagtatattaatgc |
2582373 |
T |
|
| Q |
316 |
ataaaatagacacattaactctgctattaatttttctgaataagaatgaaattcgcaatagatgcttatatttatggacaaatatattttaaaccaa |
412 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2582372 |
ataaaatagatacattaactctgctattaatttttctgaataagaatgaaattcagaatagatgcttatatttatggacaaatatattataaaccaa |
2582276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 45192541 - 45192599
Alignment:
| Q |
292 |
agggtattttaagtatattaatgcataaaatagacacattaactctgctattaattttt |
350 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||| | | |||| ||||||| |
|
|
| T |
45192541 |
agggtattttaggtatatttatacataaaatagacacattaattatactatcaattttt |
45192599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University